RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 RSPH10BP0C881 870 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 GOLGA8HP0CJ92 632 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 MFSD10Q14728 455 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 KIAA0753Q2KHM9 967 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 CCDC178Q5BJE1 867 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 SYDE2Q5VT97 1194 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 DGKHQ86XP1 1220 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 KCNB2Q92953 911 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 KRT23Q9C075 422 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 F2P00734 622 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 GH1P01241 217 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 RB1P06400 928 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 ZNF286BP0CG31 522 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 PDHBP11177 359 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 DNAJB1P25685 340 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 THPOP40225 353 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 NDUFV1P49821 464 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 NEK4P51957 841 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 COASYQ13057 564 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 ADGRD2Q7Z7M1 963 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 FIBCD1Q8N539 461 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 DNERQ8NFT8 737 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 IFIH1Q9BYX4 1025 aaKnown RBP14.43□□□□□ -0.1
SHMT2-230ENST00000557427 KAT14Q9H8E8 782 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 CNNM2Q9H8M5 875 aa14.43□□□□□ -0.1
SHMT2-230ENST00000557427 USP15Q9Y4E8 981 aaPredicted RBP14.43□□□□□ -0.1
SHMT2-230ENST00000557427 ZFHX4Q86UP3 3567 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 GLP2RO95838 553 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 MMP1P03956 469 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 ICAM3P32942 547 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 NUBP1P53384 320 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 ZNF543Q08ER8 600 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 TRDNQ13061 729 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 DGKDQ16760 1214 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 BTNL9Q6UXG8 535 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 SEPT14Q6ZU15 432 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 SERINC5Q86VE9 423 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 ENAHQ8N8S7 591 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-230ENST00000557427 RPGRIP1Q96KN7 1286 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 RIPOR3Q96MK2 946 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 UBAC1Q9BSL1 405 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 C11orf84Q9BUA3 381 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-230ENST00000557427 PHF7Q9BWX1 381 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-230ENST00000557427 UBA5Q9GZZ9 404 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 CPVLQ9H3G5 476 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 RC3H2Q9HBD1 1191 aaKnown RBP14.42□□□□□ -0.1
SHMT2-230ENST00000557427 SNX14Q9Y5W7 946 aa14.42□□□□□ -0.1
SHMT2-230ENST00000557427 U3KPZ7 1027 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-230ENST00000557427 DMXL1Q9Y485 3027 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 KMT2BQ9UMN6 2715 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-230ENST00000557427 CYP21A2P08686 494 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 PTPN21Q16825 1174 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 CYB5R4Q7L1T6 521 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 FRMD5Q7Z6J6 570 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 ADSSL1Q8N142 457 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 TMEM105Q8N8V8 129 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 PNMA1Q8ND90 353 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 SEPT8Q92599 483 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 CLP1Q92989 425 aaKnown RBP14.41□□□□□ -0.1
SHMT2-230ENST00000557427 VAT1LQ9HCJ6 419 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 BARX2Q9UMQ3 279 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-230ENST00000557427 PLAGL2Q9UPG8 496 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 TAF6LQ9Y6J9 622 aa14.41□□□□□ -0.1
SHMT2-230ENST00000557427 EPG5Q9HCE0 2579 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 CUL4AQ13619 759 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 EFHBQ8N7U6 833 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 TBC1D5Q92609 795 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 MAP4K1Q92918 833 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 EMID1Q96A84 441 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-230ENST00000557427 KATNAL1Q9BW62 490 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 TM6SF1Q9BZW5 370 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 DDX41Q9UJV9 622 aaKnown RBP14.4□□□□□ -0.1
SHMT2-230ENST00000557427 WDR87Q6ZQQ6 2873 aa14.4□□□□□ -0.1
SHMT2-230ENST00000557427 E7EWF7 191 aa14.39□□□□□ -0.11
SHMT2-230ENST00000557427 SNHG28P0DPA3 235 aa14.39□□□□□ -0.11
SHMT2-230ENST00000557427 MCM4P33991 863 aa14.39□□□□□ -0.11
SHMT2-230ENST00000557427 NT5C2P49902 561 aa14.39□□□□□ -0.11
SHMT2-230ENST00000557427 RBM10P98175 930 aaKnown RBP14.39□□□□□ -0.11
SHMT2-230ENST00000557427 NECTIN1Q15223 517 aa14.39□□□□□ -0.11
SHMT2-230ENST00000557427 IFIT1BQ5T764 474 aaKnown RBP14.39□□□□□ -0.11
SHMT2-230ENST00000557427 DHX37Q8IY37 1157 aaKnown RBP14.39□□□□□ -0.11
SHMT2-230ENST00000557427 MPHOSPH6Q99547 160 aaKnown RBP14.39□□□□□ -0.11
SHMT2-230ENST00000557427 COL20A1Q9P218 1284 aa14.39□□□□□ -0.11
SHMT2-230ENST00000557427 RBM8AQ9Y5S9 174 aaKnown RBP14.39□□□□□ -0.11
SHMT2-230ENST00000557427 ZNF292O60281 2723 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 NCOR2Q9Y618 2525 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 IFIT3O14879 490 aaKnown RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 DHX16O60231 1041 aaKnown RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 CTSHP09668 335 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 PARP1P09874 1014 aaKnown RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 HOXD8P13378 290 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 HOXC8P31273 242 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 NRIP1P48552 1158 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 NUCB2P80303 420 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 GPATCH4Q5T3I0 446 aaKnown RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 CLEC17AQ6ZS10 378 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 RALYLQ86SE5 291 aaKnown RBP14.38□□□□□ -0.11
SHMT2-230ENST00000557427 NCOA7Q8NI08 942 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 PPTC7Q8NI37 304 aa14.38□□□□□ -0.11
SHMT2-230ENST00000557427 SUSD6Q92537 303 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms