RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 STAM2O75886 525 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 MARK3P27448 753 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 ADD1P35611 737 aaKnown RBP12.53□□□□□ -0.4
SYNE2-227ENST00000557307 NEDD9Q14511 834 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 RTN1Q16799 776 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 TSGA10IPQ3SY00 556 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 TMTC2Q8N394 836 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 PHOSPHO2Q8TCD6 241 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 GDPD5Q8WTR4 605 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 KCNB2Q92953 911 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 UIMC1Q96RL1 719 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 MTUS1Q9ULD2 1270 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 MTCH2Q9Y6C9 303 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 EVPLQ92817 2033 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 TTC28Q96AY4 2481 aa12.52□□□□□ -0.4
SYNE2-227ENST00000557307 RSPH10B2B2RC85 870 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 TLL1O43897 1013 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 GJB5O95377 273 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 RSPH10BP0C881 870 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 ARP10275 920 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 KCNJ6P48051 423 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 NAPAP54920 295 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 ARHGAP4P98171 946 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 TFF2Q03403 129 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 GRB10Q13322 594 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 ITGB3BPQ13352 177 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-227ENST00000557307 Q6ZUG5 572 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 GPRASP2Q96D09 838 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 SENP7Q9BQF6 1050 aa12.52□□□□□ -0.41
SYNE2-227ENST00000557307 V9GY48 417 aaPredicted RBP12.52□□□□□ -0.41
SYNE2-227ENST00000557307 MYH9P35579 1960 aaKnown RBP12.51□□□□□ -0.41
SYNE2-227ENST00000557307 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-227ENST00000557307 HSPA4P34932 840 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 CLK2P49760 499 aaKnown RBP12.51□□□□□ -0.41
SYNE2-227ENST00000557307 MGAT3Q09327 533 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 MTMR1Q13613 665 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 PLEKHG4Q58EX7 1191 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 MARCH8Q5T0T0 291 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 RNF20Q5VTR2 975 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 NLRX1Q86UT6 975 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 TRAPPC12Q8WVT3 735 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 BRF1Q92994 677 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 JAKMIP1Q96N16 626 aaKnown RBP12.51□□□□□ -0.41
SYNE2-227ENST00000557307 USP26Q9BXU7 913 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 ANO3Q9BYT9 981 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 RIC8AQ9NPQ8 531 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 JADE2Q9NQC1 790 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 THEGQ9P2T0 379 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 NAP1L2Q9ULW6 460 aaPredicted RBP12.51□□□□□ -0.41
SYNE2-227ENST00000557307 NID2Q14112 1375 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 BDP1A6H8Y1 2624 aa12.51□□□□□ -0.41
SYNE2-227ENST00000557307 LINC01553A4QN01 128 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 SPDYE3A6NKU9 549 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 DTNBO60941 627 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 CHRNA1P02708 482 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 KCNQ1P51787 676 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 PKN1Q16512 942 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 TJAP1Q5JTD0 557 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 XRRA1Q6P2D8 792 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 MYOCDQ8IZQ8 938 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 PHKBQ93100 1093 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 NECAB3Q96P71 396 aaPredicted RBP12.5□□□□□ -0.41
SYNE2-227ENST00000557307 MXRA8Q9BRK3 442 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 C17orf80Q9BSJ5 609 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 KCNH7Q9NS40 1196 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 RBM28Q9NW13 759 aaKnown RBP12.5□□□□□ -0.41
SYNE2-227ENST00000557307 BARHL2Q9NY43 387 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 PLXNA4Q9HCM2 1894 aa12.5□□□□□ -0.41
SYNE2-227ENST00000557307 EMSYQ7Z589 1322 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 ABHD14A-ACY1A0A1B0GW23 586 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 SMCO2A6NFE2 343 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 DDX39AO00148 427 aaKnown RBP12.49□□□□□ -0.41
SYNE2-227ENST00000557307 EDIL3O43854 480 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 CCNE2O96020 404 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 ADCY7P51828 1080 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 IGBP1P78318 339 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 PPFIA1Q13136 1202 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 IKBKEQ14164 716 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 GRIK4Q16099 956 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 JAKMIP3Q5VZ66 844 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 PPP1R18Q6NYC8 613 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 SYNE3Q6ZMZ3 975 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 RASGRP4Q8TDF6 673 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 CRYGNQ8WXF5 182 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 LINC01599Q8WXQ3 324 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 CCDC136Q96JN2 1154 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 LARP6Q9BRS8 491 aaKnown RBP12.49□□□□□ -0.41
SYNE2-227ENST00000557307 ZBED2Q9BTP6 218 aa12.49□□□□□ -0.41
SYNE2-227ENST00000557307 NCOA5Q9HCD5 579 aaKnown RBP12.49□□□□□ -0.41
SYNE2-227ENST00000557307 ZNF215Q9UL58 517 aaPredicted RBP12.49□□□□□ -0.41
SYNE2-227ENST00000557307 FNDC1Q4ZHG4 1894 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 BRWD1Q9NSI6 2320 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 IGLV3-22A0A075B6J6 115 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 FAM86B1E9PN63 330 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 PARNO95453 639 aaKnown RBP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 FAM86B2P0C5J1 330 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 GHRP10912 638 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 POU3F3P20264 500 aaPredicted RBP12.48□□□□□ -0.41
SYNE2-227ENST00000557307 RPS6KB1P23443 525 aa12.48□□□□□ -0.41
SYNE2-227ENST00000557307 SREBF1P36956 1147 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms