RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PDLIM7Q9NR12 457 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 DDX25Q9UHL0 483 aaKnown RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 TCEAL9Q9UHQ7 104 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 ZNF215Q9UL58 517 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-228ENST00000557302 TELO2Q9Y4R8 837 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 SCN10AQ9Y5Y9 1956 aa15.4■□□□□ 0.06
SHMT2-228ENST00000557302 GSTTP1A0A1W2PQM5 241 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 H3BRB1 525 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 MSH4O15457 936 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 DHX15O43143 795 aaKnown RBP15.39■□□□□ 0.05
SHMT2-228ENST00000557302 CCNT1O60563 726 aaKnown RBP15.39■□□□□ 0.05
SHMT2-228ENST00000557302 SYN1P17600 705 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 ACTR2P61160 394 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 PTPN11Q06124 597 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-228ENST00000557302 PPP4R3AQ6IN85 833 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 HSCBQ8IWL3 235 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 C7orf31Q8N865 590 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 TUT1Q9H6E5 874 aaKnown RBP15.39■□□□□ 0.05
SHMT2-228ENST00000557302 TMEM39AQ9NV64 488 aa15.39■□□□□ 0.05
SHMT2-228ENST00000557302 H3BQV1 296 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 HAS3O00219 553 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 GAS7O60861 476 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 CCNE2O96020 404 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 KRT76Q01546 638 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 FAAP100Q0VG06 881 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 SESTD1Q86VW0 696 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 TRIM50Q86XT4 487 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 PPP1R13LQ8WUF5 828 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 GLG1Q92896 1179 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 SLC5A5Q92911 643 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 RIT2Q99578 217 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 TRPV6Q9H1D0 765 aa15.38■□□□□ 0.05
SHMT2-228ENST00000557302 DOCK5Q9H7D0 1870 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 SLC37A4O43826 429 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 B4GALT4O60513 344 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 CD4P01730 458 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 SUPT20HL2P0C7V6 817 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 LRCH2Q5VUJ6 765 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 LARP1BQ659C4 914 aaKnown RBP15.37■□□□□ 0.05
SHMT2-228ENST00000557302 ZNF746Q6NUN9 644 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-228ENST00000557302 MIS18BP1Q6P0N0 1132 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 SH3RF1Q7Z6J0 888 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 NOSTRINQ8IVI9 506 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 SMAP1Q8IYB5 467 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-228ENST00000557302 ETNPPLQ8TBG4 499 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 INTS4Q96HW7 963 aaKnown RBP15.37■□□□□ 0.05
SHMT2-228ENST00000557302 TEKT3Q9BXF9 490 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 SMARCAD1Q9H4L7 1026 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 AZI2Q9H6S1 392 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 TRMT13Q9NUP7 481 aaKnown RBP15.37■□□□□ 0.05
SHMT2-228ENST00000557302 TBX21Q9UL17 535 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 EMSYQ7Z589 1322 aa15.37■□□□□ 0.05
SHMT2-228ENST00000557302 TRIM43BA6NCK2 446 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 KIF28PB7ZC32 967 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 KIAA0355O15063 1070 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 MARCH6O60337 910 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 LGR5O75473 907 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 ATG7O95352 703 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 U2AF2P26368 475 aaKnown RBP eCLIP15.36■□□□□ 0.05
SHMT2-228ENST00000557302 ABHD15Q6UXT9 468 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 GJA10Q969M2 543 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 TRIM43Q96BQ3 446 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-228ENST00000557302 FAM20AQ96MK3 541 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 KCNMB3Q9NPA1 279 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 ERAP1Q9NZ08 941 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 HDAC6Q9UBN7 1215 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 GTF2IRD1Q9UHL9 959 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 NOD1Q9Y239 953 aa15.36■□□□□ 0.05
SHMT2-228ENST00000557302 WDR64B1ANS9 1081 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 BACH1O14867 736 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 TBX3O15119 743 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 CHMP2AO43633 222 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 PSMD10O75832 226 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 SMIM10L2AP0DMW4 78 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 SMIM10L2BP0DMW5 78 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 RAG1P15918 1043 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 ATP2B1P20020 1258 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 PDCP20941 246 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 PTGISQ16647 500 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 FAM160B1Q5W0V3 765 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 MCTP1Q6DN14 999 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 GDF6Q6KF10 455 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-228ENST00000557302 PCYT2Q99447 389 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 LBHD1Q9BQE6 289 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-228ENST00000557302 NOL7Q9UMY1 257 aaKnown RBP15.35■□□□□ 0.05
SHMT2-228ENST00000557302 SAMM50Q9Y512 469 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 PCDHA10Q9Y5I2 948 aa15.35■□□□□ 0.05
SHMT2-228ENST00000557302 IGKV6D-21A0A0A0MT36 114 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 C17orf102A2RUQ5 167 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 NEMFO60524 1076 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 BAG4O95429 457 aaKnown RBP15.34■□□□□ 0.05
SHMT2-228ENST00000557302 PSAPP07602 524 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 MARK3P27448 753 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 SFNP31947 248 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 MAGEA10P43363 369 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-228ENST00000557302 TRAPPC10P48553 1259 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 STAT5BP51692 787 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 JAK3P52333 1124 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 PLPPR4Q7Z2D5 763 aa15.34■□□□□ 0.05
SHMT2-228ENST00000557302 UNC45AQ9H3U1 944 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms