RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TM4SF20Q53R12 229 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 ZNF385BQ569K4 471 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 CD300LDQ6UXZ3 194 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 DDX53Q86TM3 631 aaKnown RBP6.71□□□□□ -1.34
SCFD1-221ENST00000556534 PROSER1Q86XN7 944 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 DHX37Q8IY37 1157 aaKnown RBP6.71□□□□□ -1.34
SCFD1-221ENST00000556534 LRRC56Q8IYG6 542 aaPredicted RBP6.71□□□□□ -1.34
SCFD1-221ENST00000556534 FNIP1Q8TF40 1166 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 MFSD3Q96ES6 412 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 TOX2Q96NM4 488 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 NGRNQ9NPE2 291 aaKnown RBP6.71□□□□□ -1.34
SCFD1-221ENST00000556534 SAMD15Q9P1V8 674 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 WASF3Q9UPY6 502 aa6.71□□□□□ -1.34
SCFD1-221ENST00000556534 FAM90A27PA6NNH2 459 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 M0R2C6 588 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 ACOT7O00154 380 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 NUAK1O60285 661 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 FAHP16930 419 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 CFPP27918 469 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 NKX3-2P78367 333 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 CAP1Q01518 475 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 DLX2Q07687 328 aaPredicted RBP6.7□□□□□ -1.34
SCFD1-221ENST00000556534 CIAPIN1Q6FI81 312 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 OTOP1Q7RTM1 612 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 NLGN4XQ8N0W4 816 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 LINC00482Q8N8I6 264 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 PWWP2AQ96N64 755 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 RBPJLQ9UBG7 517 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 ATP23Q9Y6H3 246 aa6.7□□□□□ -1.34
SCFD1-221ENST00000556534 CLASP2O75122 1294 aaKnown RBP6.69□□□□□ -1.34
SCFD1-221ENST00000556534 JMJD7P0C870 316 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 YBX3P16989 372 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCFD1-221ENST00000556534 PTPN1P18031 435 aaKnown RBP6.69□□□□□ -1.34
SCFD1-221ENST00000556534 POU3F2P20265 443 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-221ENST00000556534 AFF3P51826 1226 aaKnown RBP6.69□□□□□ -1.34
SCFD1-221ENST00000556534 JAG1P78504 1218 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 ADAM9Q13443 819 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 SEC23AQ15436 765 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 PIK3R6Q5UE93 754 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 LIPIQ6XZB0 460 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 LRRTM3Q86VH5 581 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 CHST14Q8NCH0 376 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 C11orf84Q9BUA3 381 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-221ENST00000556534 IRF2BPLQ9H1B7 796 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 PCDH18Q9HCL0 1135 aa6.69□□□□□ -1.34
SCFD1-221ENST00000556534 CBX4O00257 560 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 GJA4P35212 333 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 THBS2P35442 1172 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 BTBD8Q5XKL5 378 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 CD276Q5ZPR3 534 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 CPZQ66K79 652 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 CDCA2Q69YH5 1023 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-221ENST00000556534 SAPCD2Q86UD0 394 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 ZBTB8AQ96BR9 441 aa6.68□□□□□ -1.34
SCFD1-221ENST00000556534 TARS2Q9BW92 718 aaKnown RBP6.68□□□□□ -1.34
SCFD1-221ENST00000556534 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-221ENST00000556534 SLC12A8A0AV02 714 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 GSG1L2A8MUP6 293 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 TRAF5O00463 557 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 FFAR3O14843 346 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 C4BPAP04003 597 aaKnown RBP6.67□□□□□ -1.34
SCFD1-221ENST00000556534 FLT3P36888 993 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 GYS2P54840 703 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 SMAD4Q13485 552 aaKnown RBP6.67□□□□□ -1.34
SCFD1-221ENST00000556534 RTP5Q14D33 572 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 TMC5Q6UXY8 1006 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 STK32CQ86UX6 486 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 TMEM151BQ8IW70 566 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 C2orf69Q8N8R5 385 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 KYQ8NBH2 561 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 ORAI3Q9BRQ5 295 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 RIC8BQ9NVN3 520 aa6.67□□□□□ -1.34
SCFD1-221ENST00000556534 SPATA6Q9NWH7 488 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-221ENST00000556534 A0A087X0B3 334 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 SMARCA5O60264 1052 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-221ENST00000556534 KPNA6O60684 536 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 ZBTB48P10074 688 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-221ENST00000556534 IRF9Q00978 393 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 CFAP100Q494V2 611 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 CNNM4Q6P4Q7 775 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 LCNL1Q6ZST4 164 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 DTX3Q8N9I9 347 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 TP53I13Q8NBR0 393 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-221ENST00000556534 DDX1Q92499 740 aaKnown RBP6.66□□□□□ -1.34
SCFD1-221ENST00000556534 DLG3Q92796 817 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 ZSWIM3Q96MP5 696 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 TMEM209Q96SK2 561 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 BOCQ9BWV1 1114 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 MTFR1LQ9H019 292 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 B3GALT1Q9Y5Z6 326 aa6.66□□□□□ -1.34
SCFD1-221ENST00000556534 SH3D21A4FU49 640 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 ZNF839A8K0R7 811 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 SCDO00767 359 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 DBPQ10586 325 aaPredicted RBP6.65□□□□□ -1.34
SCFD1-221ENST00000556534 TCERG1LQ5VWI1 586 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 EGFLAMQ63HQ2 1017 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 CREB3L3Q68CJ9 461 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 VASNQ6EMK4 673 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 PKN3Q6P5Z2 889 aa6.65□□□□□ -1.34
SCFD1-221ENST00000556534 UBE2R2Q712K3 238 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms