RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 MCMDC2Q4G0Z9 681 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 BRDTQ58F21 947 aaPredicted RBP11.73□□□□□ -0.53
SCFD1-220ENST00000556486 ANKRD45Q5TZF3 282 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 CNKSR3Q6P9H4 555 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 THSD4Q6ZMP0 1018 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 RETREG3Q86VR2 466 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 WDR19Q8NEZ3 1342 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 AFAP1L1Q8TED9 768 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 AFG1LQ8WV93 481 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 RAD50Q92878 1312 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 WNT8BQ93098 351 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 TMEM47Q9BQJ4 181 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 ALG1Q9BT22 464 aa11.73□□□□□ -0.53
SCFD1-220ENST00000556486 ADD3Q9UEY8 706 aaKnown RBP11.73□□□□□ -0.53
SCFD1-220ENST00000556486 A0A0D9SFI3 127 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 SORBS3O60504 671 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 HSPD1P10809 573 aaKnown RBP11.72□□□□□ -0.53
SCFD1-220ENST00000556486 PDHBP11177 359 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 CKBP12277 381 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 EDNRBP24530 442 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 ZNF200P98182 395 aaPredicted RBP11.72□□□□□ -0.53
SCFD1-220ENST00000556486 ZP2Q05996 745 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 LY6KQ17RY6 165 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 TCEAL5Q5H9L2 206 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 SYDE2Q5VT97 1194 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 MYOCDQ8IZQ8 938 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 CCDC155Q8N6L0 562 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 NEK9Q8TD19 979 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 CLEC4DQ8WXI8 215 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 FAM227BQ96M60 508 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 MUTYHQ9UIF7 546 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 ZNF318Q5VUA4 2279 aa11.72□□□□□ -0.53
SCFD1-220ENST00000556486 MICAL3Q7RTP6 2002 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 UPP2O95045 317 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 ZNF286BP0CG31 522 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 IRS1P35568 1242 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 ZNF543Q08ER8 600 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 MBTPS1Q14703 1052 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 ZNF618Q5T7W0 954 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 DESI1Q6ICB0 168 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 RNF207Q6ZRF8 634 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 SEPT14Q6ZU15 432 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 ZNF589Q86UQ0 364 aaPredicted RBP11.71□□□□□ -0.53
SCFD1-220ENST00000556486 SMC5Q8IY18 1101 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 PRSS33Q8NF86 280 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 DNERQ8NFT8 737 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 CAGE1Q8TC20 777 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 SCFD2Q8WU76 684 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 KAT2BQ92831 832 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 CLDND1Q9NY35 253 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 HDAC6Q9UBN7 1215 aa11.71□□□□□ -0.53
SCFD1-220ENST00000556486 CCDC171Q6TFL3 1326 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 CXCL10P02778 98 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 MMP3P08254 477 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 RPS6P62753 249 aaKnown RBP11.7□□□□□ -0.54
SCFD1-220ENST00000556486 PTPN11Q06124 597 aaPredicted RBP11.7□□□□□ -0.54
SCFD1-220ENST00000556486 IKBKEQ14164 716 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 EPC2Q52LR7 807 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 GPATCH4Q5T3I0 446 aaKnown RBP11.7□□□□□ -0.54
SCFD1-220ENST00000556486 TMEM164Q5U3C3 297 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 MRPL38Q96DV4 380 aaKnown RBP11.7□□□□□ -0.54
SCFD1-220ENST00000556486 ZFRQ96KR1 1074 aaKnown RBP11.7□□□□□ -0.54
SCFD1-220ENST00000556486 OSBPL3Q9H4L5 887 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 RNF41Q9H4P4 317 aaPredicted RBP11.7□□□□□ -0.54
SCFD1-220ENST00000556486 FAM86C1Q9NVL1 165 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 ZMIZ1Q9ULJ6 1067 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 MYH7BA7E2Y1 1941 aa11.7□□□□□ -0.54
SCFD1-220ENST00000556486 ABHD14A-ACY1A0A1B0GW23 586 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 PIK3CDO00329 1044 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 NKRFO15226 690 aaKnown RBP eCLIP11.69□□□□□ -0.54
SCFD1-220ENST00000556486 KPNA6O60684 536 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 FBXO45P0C2W1 286 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 DLX2Q07687 328 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-220ENST00000556486 NMIQ13287 307 aaPredicted RBP11.69□□□□□ -0.54
SCFD1-220ENST00000556486 GPM6BQ13491 265 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 USH1GQ495M9 461 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 TRAF7Q6Q0C0 670 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 MFSD6Q6ZSS7 791 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 DGKHQ86XP1 1220 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 OSBPL7Q9BZF2 842 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 CPVLQ9H3G5 476 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 MYO7AQ13402 2215 aa11.69□□□□□ -0.54
SCFD1-220ENST00000556486 KIAA1217Q5T5P2 1943 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 GTF2F1P35269 517 aaKnown RBP eCLIP11.68□□□□□ -0.54
SCFD1-220ENST00000556486 PTPN5P54829 565 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 ARHGAP1Q07960 439 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 PTPROQ16827 1216 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 LYPD8Q6UX82 237 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 RPAINQ86UA6 219 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 TBC1D10CQ8IV04 446 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 ADHFE1Q8IWW8 467 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 C7orf31Q8N865 590 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 DBF4BQ8NFT6 615 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 STK32AQ8WU08 396 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 TBC1D5Q92609 795 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 ESR2Q92731 530 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 PABPC5Q96DU9 382 aaKnown RBP11.68□□□□□ -0.54
SCFD1-220ENST00000556486 MPHOSPH6Q99547 160 aaKnown RBP11.68□□□□□ -0.54
SCFD1-220ENST00000556486 IGFLR1Q9H665 355 aa11.68□□□□□ -0.54
SCFD1-220ENST00000556486 TOMM22Q9NS69 142 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms