RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 RBM23Q86U06 439 aaKnown RBP11.25□□□□□ -0.61
SCFD1-215ENST00000555259 RIPOR3Q96MK2 946 aa11.25□□□□□ -0.61
SCFD1-215ENST00000555259 PDCD2LQ9BRP1 358 aa11.25□□□□□ -0.61
SCFD1-215ENST00000555259 CHMP4BQ9H444 224 aaKnown RBP11.25□□□□□ -0.61
SCFD1-215ENST00000555259 SETD4Q9NVD3 440 aa11.25□□□□□ -0.61
SCFD1-215ENST00000555259 MRPL11Q9Y3B7 192 aaKnown RBP11.25□□□□□ -0.61
SCFD1-215ENST00000555259 MRPL42Q9Y6G3 142 aaKnown RBP11.25□□□□□ -0.61
SCFD1-215ENST00000555259 ENPP3O14638 875 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 CFBP00751 764 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 CHRNA1P02708 482 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 TGFB3P10600 412 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 GHRP10912 638 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 GNAT1P11488 350 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 MYCLP12524 364 aaPredicted RBP11.24□□□□□ -0.61
SCFD1-215ENST00000555259 ALX1Q15699 326 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 QRICH1Q2TAL8 776 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 ADGRF4Q8IZF3 695 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 KLHL23Q8NBE8 558 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 PI4K2BQ8TCG2 481 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 POF1BQ8WVV4 589 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 SUSD6Q92537 303 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 EHMT1Q9H9B1 1298 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 MLXIPQ9HAP2 919 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 TTC3P53804 2025 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 TTC41PQ6P2S7 1318 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 CCDC171Q6TFL3 1326 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 OPLAHO14841 1288 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 FGAP02671 866 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 HSD17B4P51659 736 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 ADAM17P78536 824 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 VSIG10LQ86VR7 867 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 LMBR1Q8WVP7 490 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 GPKOWQ92917 476 aaPredicted RBP eCLIP11.24□□□□□ -0.61
SCFD1-215ENST00000555259 USP26Q9BXU7 913 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 BCAS3Q9H6U6 928 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 PCDHGC5Q9Y5F6 944 aa11.24□□□□□ -0.61
SCFD1-215ENST00000555259 ARHGAP4P98171 946 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 RBM10P98175 930 aaKnown RBP11.23□□□□□ -0.61
SCFD1-215ENST00000555259 GHRHRQ02643 423 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 LPIN1Q14693 890 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 PGM5Q15124 567 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 STOX1Q6ZVD7 989 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 TRIM50Q86XT4 487 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 CMTR2Q8IYT2 770 aaKnown RBP11.23□□□□□ -0.61
SCFD1-215ENST00000555259 TMEM105Q8N8V8 129 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 IL31RAQ8NI17 732 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 TLE6Q9H808 572 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 SUPT16HQ9Y5B9 1047 aaKnown RBP11.23□□□□□ -0.61
SCFD1-215ENST00000555259 ZFHX4Q86UP3 3567 aa11.23□□□□□ -0.61
SCFD1-215ENST00000555259 CACNA1BQ00975 2339 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 KIAA1671Q9BY89 1806 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 NOP56O00567 594 aaKnown RBP11.22□□□□□ -0.61
SCFD1-215ENST00000555259 PER2O15055 1255 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 MGAT3Q09327 533 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 ZBTB33Q86T24 672 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 MIER1Q8N108 512 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 CRIPAKQ8N1N5 446 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 VN1R2Q8NFZ6 395 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 ATP8B4Q8TF62 1192 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 NKD2Q969F2 451 aaPredicted RBP11.22□□□□□ -0.61
SCFD1-215ENST00000555259 ZFP91Q96JP5 570 aaPredicted RBP11.22□□□□□ -0.61
SCFD1-215ENST00000555259 DCTPP1Q9H773 170 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 JMJD4Q9H9V9 463 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 ZNF292O60281 2723 aa11.22□□□□□ -0.61
SCFD1-215ENST00000555259 DHX16O60231 1041 aaKnown RBP11.21□□□□□ -0.61
SCFD1-215ENST00000555259 KCNA4P22459 653 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 HAND2P61296 217 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 PAN2Q504Q3 1202 aaKnown RBP11.21□□□□□ -0.61
SCFD1-215ENST00000555259 ASPRV1Q53RT3 343 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 METTL7BQ6UX53 244 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 RUFY4Q6ZNE9 571 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 FRMD5Q7Z6J6 570 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 DGKHQ86XP1 1220 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 ADSSL1Q8N142 457 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 KREMEN2Q8NCW0 462 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 PNMA1Q8ND90 353 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 LINC01599Q8WXQ3 324 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 NEK1Q96PY6 1258 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 GPR20Q99678 358 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 ZKSCAN3Q9BRR0 538 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 VAT1LQ9HCJ6 419 aa11.21□□□□□ -0.61
SCFD1-215ENST00000555259 ZNF215Q9UL58 517 aaPredicted RBP11.21□□□□□ -0.61
SCFD1-215ENST00000555259 FRYLO94915 3013 aa11.21□□□□□ -0.62
SCFD1-215ENST00000555259 MYH6P13533 1939 aa11.21□□□□□ -0.62
SCFD1-215ENST00000555259 PPFIA3O75145 1194 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 PCP11498 1178 aaKnown RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 CCND2P30279 289 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 HOXA13P31271 388 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 HNRNPUQ00839 825 aaKnown RBP eCLIP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 FBXO47Q5MNV8 452 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 TAF2Q6P1X5 1199 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 MFSD6Q6ZSS7 791 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 TSHZ1Q6ZSZ6 1077 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 TBC1D10CQ8IV04 446 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 MICAL1Q8TDZ2 1067 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 OTUD7AQ8TE49 926 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 AMNQ9BXJ7 453 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 MAP3K20Q9NYL2 800 aaKnown RBP11.2□□□□□ -0.62
SCFD1-215ENST00000555259 EPG5Q9HCE0 2579 aa11.2□□□□□ -0.62
SCFD1-215ENST00000555259 EP300Q09472 2414 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms