RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 RPUSD2Q8IZ73 545 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 RETREG2Q8NC44 543 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 CAGE1Q8TC20 777 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 RASGRP4Q8TDF6 673 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 SEPT1Q8WYJ6 367 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 AGO4Q9HCK5 861 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 SH3GLB2Q9NR46 395 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 MTMR10Q9NXD2 777 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 PKD2L1Q9P0L9 805 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 NOD1Q9Y239 953 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 PRUNE2Q8WUY3 3088 aa11.73□□□□□ -0.53
CCDC88C-206ENST00000553437 NFASCO94856 1347 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 IGLV3-22A0A075B6J6 115 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 FAM86B1E9PN63 330 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 CPLX1O14810 134 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 PFKFB2O60825 505 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 EIF5BO60841 1220 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 DEXIO95424 95 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 FAM86B2P0C5J1 330 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 CKBP12277 381 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 RFC2P35250 354 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 TCF7P36402 384 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 ADAM17P78536 824 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 C8orf34Q49A92 452 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 MCTP2Q6DN12 878 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 SERINC5Q86VE9 423 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 TRIM22Q8IYM9 498 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 REXO1Q8N1G1 1221 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 CCDC148Q8NFR7 591 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 AFAP1L1Q8TED9 768 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 AIFM3Q96NN9 605 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 PCYT2Q99447 389 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 RNPEPQ9H4A4 650 aa11.72□□□□□ -0.53
CCDC88C-206ENST00000553437 C17orf102A2RUQ5 167 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 GRXCR1A8MXD5 290 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 RBAK-RBAKDNI3L0D1 243 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 M0R2N6 131 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 DHX15O43143 795 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 TREHO43280 583 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 LGR5O75473 907 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 CTDNEP1O95476 244 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 PFKMP08237 780 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 SELPP16109 830 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 CIITAP33076 1130 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 ANKRD1Q15327 319 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 NPY5RQ15761 445 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 OTOP2Q7RTS6 562 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 DEFB128Q7Z7B8 93 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 CCDC155Q8N6L0 562 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 BICD2Q8TD16 824 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 SLKQ9H2G2 1235 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 TTYH1Q9H313 450 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 JPH1Q9HDC5 661 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 SETD4Q9NVD3 440 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 SLC9A2Q9UBY0 812 aa11.71□□□□□ -0.53
CCDC88C-206ENST00000553437 CHD9Q3L8U1 2897 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 NBNO60934 754 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 DTNBO60941 627 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 ATG7O95352 703 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 LARGE1O95461 756 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 CCNE2O96020 404 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 ZNF76P36508 570 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 NLRP5P59047 1200 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 ACTR2P61160 394 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 MBTPS1Q14703 1052 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 ME3Q16798 604 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 ZNF618Q5T7W0 954 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 CPLX2Q6PUV4 134 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 LRRC8DQ7L1W4 858 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 PLA2G4DQ86XP0 818 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 FAM177A1Q8N128 213 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 ATP6V0A1Q93050 837 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 LENG9Q96B70 501 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 GUCD1Q96NT3 240 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 SEMA6BQ9H3T3 888 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 ZNF215Q9UL58 517 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 PCDHA4Q9UN74 947 aa11.7□□□□□ -0.54
CCDC88C-206ENST00000553437 EMSYQ7Z589 1322 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 NRCAMQ92823 1304 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 CXCL10P02778 98 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 DNAJB2P25686 324 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 PBX2P40425 430 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 NEK4P51957 841 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 TCTN1Q2MV58 587 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 ZNF697Q5TEC3 545 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 NECAB1Q8N987 351 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 DAGLBQ8NCG7 672 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 LMBR1Q8WVP7 490 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 FAM161BQ96MY7 647 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 SDF4Q9BRK5 362 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 PBX4Q9BYU1 374 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 MTIF3Q9H2K0 278 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 SMARCAD1Q9H4L7 1026 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 ERAP1Q9NZ08 941 aa11.69□□□□□ -0.54
CCDC88C-206ENST00000553437 STK36Q9NRP7 1315 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 TMEM265A0A087WTH1 108 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 IGKV6D-21A0A0A0MT36 114 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 IPO5O00410 1097 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 CDKL5O76039 1030 aa11.68□□□□□ -0.54
CCDC88C-206ENST00000553437 PARNO95453 639 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms