RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TTLL1O95922 423 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 IVLP07476 585 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 FAM153BP0C7A2 387 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PLA2G4BP0C869 781 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 GOLGA6DP0CG33 693 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 POTEIP0CG38 1075 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PRLRP16471 622 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 CARSP49589 748 aaKnown RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 CACNB3P54284 484 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PSMC6P62333 389 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 NFIAQ12857 509 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PSMD2Q13200 908 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 VPS72Q15906 364 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 FAM153CQ494X1 144 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 CRY2Q49AN0 593 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 SLC9C1Q4G0N8 1177 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 HERC4Q5GLZ8 1057 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 SFMBT2Q5VUG0 894 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 IQCEQ6IPM2 695 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 C8orf74Q6P047 294 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 POTEGQ6S5H5 508 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 POTEEQ6S8J3 1075 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 GPBP1Q86WP2 473 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PROCA1Q8NCQ7 364 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 KCNV2Q8TDN2 545 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 CUL5Q93034 780 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.27□□□□□ -1.09
LIMA1-213ENST00000552720 PSTPIP2Q9H939 334 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 GOLGA6AQ9NYA3 693 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 CEP72Q9P209 647 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 STIM2Q9P246 746 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 ADAMTS1Q9UHI8 967 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 FAM153AQ9UHL3 310 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 SERPINB13Q9UIV8 391 aa8.27□□□□□ -1.09
LIMA1-213ENST00000552720 GYS1P13807 737 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 CYP11B2P19099 503 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 ARSHQ5FYA8 562 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 CCDC70Q6NSX1 233 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 SLC30A10Q6XR72 485 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 TRIM59Q8IWR1 403 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 NOX5Q96PH1 765 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 KCTD10Q9H3F6 313 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 EMILIN3Q9NT22 766 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 NFU1Q9UMS0 254 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.26□□□□□ -1.09
LIMA1-213ENST00000552720 SSU72P8A0A1W2PR75 194 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 RBAK-RBAKDNI3L0D1 243 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 hCG_1984214I3L0E3 225 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 ZBTB5O15062 677 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 KRT14P02533 472 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 SERPING1P05155 500 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 SLC9A1P19634 815 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 PAFAH1B1P43034 410 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 DOK7Q18PE1 504 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 TTMPQ5BVD1 217 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 KCTD16Q68DU8 428 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 SH2D3CQ8N5H7 860 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 ZNF713Q8N859 430 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-213ENST00000552720 FAM76AQ8TAV0 307 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 CERKQ8TCT0 537 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 IFT81Q8WYA0 676 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 IQCDQ96DY2 449 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 ZIM3Q96PE6 472 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 RASSF4Q9H2L5 321 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 IKZF4Q9H2S9 585 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 USP40Q9NVE5 1235 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 ATP6V0A2Q9Y487 856 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 ANKRD31Q8N7Z5 1873 aa8.26□□□□□ -1.09
LIMA1-213ENST00000552720 IRAK1P51617 712 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 GUCY2FP51841 1108 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 MRPL12P52815 198 aaKnown RBP8.25□□□□□ -1.09
LIMA1-213ENST00000552720 PPARDQ03181 441 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 ITIH3Q06033 890 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 DDR1Q08345 913 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 ADAM9Q13443 819 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 KIAA0753Q2KHM9 967 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 QRICH1Q2TAL8 776 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 CERS3Q8IU89 383 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 SLF2Q8IX21 1173 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 RBM17Q96I25 401 aaKnown RBP8.25□□□□□ -1.09
LIMA1-213ENST00000552720 KRT12Q99456 494 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 DNAJC18Q9H819 358 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 EPB41L5Q9HCM4 733 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 AJAP1Q9UKB5 411 aaPredicted RBP8.25□□□□□ -1.09
LIMA1-213ENST00000552720 LRRC37AA6NMS7 1700 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 MYH11P35749 1972 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 GRID2IPA4D2P6 1211 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 RSPH10B2B2RC85 870 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 PPFIA4O75335 1185 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 HEXIM1O94992 359 aaKnown RBP8.25□□□□□ -1.09
LIMA1-213ENST00000552720 KRT18P05783 430 aaKnown RBP8.25□□□□□ -1.09
LIMA1-213ENST00000552720 RSPH10BP0C881 870 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 HOXD13P35453 343 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 EPHB4P54760 987 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 GUCY2DQ02846 1103 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 KLHL30Q0D2K2 578 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 TCP10Q12799 353 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 KCNH2Q12809 1159 aa8.25□□□□□ -1.09
LIMA1-213ENST00000552720 PABPC4Q13310 644 aaKnown RBP eCLIP8.25□□□□□ -1.09
LIMA1-213ENST00000552720 NAB2Q15742 525 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms