RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ARHGAP1Q07960 439 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 E2F4Q16254 413 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 PKN2Q16513 984 aaKnown RBP10.77□□□□□ -0.69
LIMA1-211ENST00000552338 SKOR2Q2VWA4 1001 aaPredicted RBP10.77□□□□□ -0.69
LIMA1-211ENST00000552338 CCDC144BQ3MJ40 725 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 TMEM119Q4V9L6 283 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 USP49Q70CQ1 688 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 C4orf19Q8IY42 314 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 PPTC7Q8NI37 304 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 SYMPKQ92797 1274 aaKnown RBP10.77□□□□□ -0.69
LIMA1-211ENST00000552338 NT5C3AQ9H0P0 336 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 CUEDC2Q9H467 287 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 JPH1Q9HDC5 661 aaPredicted RBP10.77□□□□□ -0.69
LIMA1-211ENST00000552338 FAM13BQ9NYF5 915 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 FAM184BQ9ULE4 1060 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 PCDHA10Q9Y5I2 948 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 DDX49Q9Y6V7 483 aaKnown RBP10.77□□□□□ -0.69
LIMA1-211ENST00000552338 KDM3AQ9Y4C1 1321 aa10.77□□□□□ -0.69
LIMA1-211ENST00000552338 GSTTP1A0A1W2PQM5 241 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 GOLGA6L4A6NEF3 574 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 POTEMA6NI47 508 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 A6NJR5 290 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 FOXN1O15353 648 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 MARCH6O60337 910 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 DUSP11O75319 330 aaKnown RBP10.76□□□□□ -0.69
LIMA1-211ENST00000552338 PPFIA4O75335 1185 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 GGPS1O95749 300 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 CCNE2O96020 404 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 GH1P01241 217 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 PFKFB1P16118 471 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 SMPD1P17405 629 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 CYP2C19P33261 490 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 UBA7P41226 1012 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 ADCYAP1R1P41586 468 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 FAM160A1Q05DH4 1040 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 CACNB2Q08289 660 aaPredicted RBP10.76□□□□□ -0.69
LIMA1-211ENST00000552338 LY6KQ17RY6 165 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 KLHL40Q2TBA0 621 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 KRT79Q5XKE5 535 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 CNNM4Q6P4Q7 775 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 EEPD1Q7L9B9 569 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 SH3RF1Q7Z6J0 888 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 CATSPER3Q86XQ3 398 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 TRPV1Q8NER1 839 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 ERMNQ8TAM6 284 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 RAET1EQ8TD07 263 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 GPT2Q8TD30 523 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 SEPT1Q8WYJ6 367 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 GJA10Q969M2 543 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 EPSTI1Q96J88 318 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 GPR20Q99678 358 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 EIF2AK1Q9BQI3 630 aaKnown RBP10.76□□□□□ -0.69
LIMA1-211ENST00000552338 UPF3AQ9H1J1 476 aaKnown RBP10.76□□□□□ -0.69
LIMA1-211ENST00000552338 GOLPH3LQ9H4A5 285 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 BCAS3Q9H6U6 928 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 MAGEF1Q9HAY2 307 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 DISC1Q9NRI5 854 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 KCNH3Q9ULD8 1083 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 MAFBQ9Y5Q3 323 aaPredicted RBP10.76□□□□□ -0.69
LIMA1-211ENST00000552338 EMSYQ7Z589 1322 aa10.76□□□□□ -0.69
LIMA1-211ENST00000552338 KAT6AQ92794 2004 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 A0A087X0B3 334 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 A0A1B0GVL5 298 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.75□□□□□ -0.69
LIMA1-211ENST00000552338 ADCY6O43306 1168 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 MSCO60682 206 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 DKC1O60832 514 aaKnown RBP eCLIP10.75□□□□□ -0.69
LIMA1-211ENST00000552338 ZNF202O95125 648 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 STBD1O95210 358 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 CAPN2P17655 700 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 CST5P28325 142 aaPredicted RBP10.75□□□□□ -0.69
LIMA1-211ENST00000552338 GRK4P32298 578 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 TXLNAP40222 546 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 SLC26A2P50443 739 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 NDUFA8P51970 172 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 GJA9P57773 515 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 ACTR2P61160 394 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 TNFAIP2Q03169 654 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 GRB10Q13322 594 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 HSDL1Q3SXM5 330 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 NAALADL2Q58DX5 795 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 CHRDL2Q6WN34 429 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 CCDC73Q6ZRK6 1079 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 CYFIP1Q7L576 1253 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 PLPPR4Q7Z2D5 763 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 MIER3Q7Z3K6 550 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 CABP7Q86V35 215 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 DHX37Q8IY37 1157 aaKnown RBP10.75□□□□□ -0.69
LIMA1-211ENST00000552338 PNMA5Q96PV4 448 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 PRDM10Q9NQV6 1147 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 STK17AQ9UEE5 414 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 CCDC39Q9UFE4 941 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 TRIM17Q9Y577 477 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 SCN10AQ9Y5Y9 1956 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 IGSF9BQ9UPX0 1349 aa10.75□□□□□ -0.69
LIMA1-211ENST00000552338 ARID2Q68CP9 1835 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 PCNTO95613 3336 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 CTAGE5O15320 804 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 MED24O75448 989 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 MYL1P05976 194 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms