RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 NTRK3Q16288 839 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 PKN1Q16512 942 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 TRIM71Q2Q1W2 868 aaKnown RBP16.77■□□□□ 0.28
LINC00661-203ENST00000549131 CEP55Q53EZ4 464 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 ZNF618Q5T7W0 954 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 SERINC5Q86VE9 423 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 CCDC148Q8NFR7 591 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 CYP2W1Q8TAV3 490 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 SDF4Q9BRK5 362 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 TM6SF1Q9BZW5 370 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 NKX2-4Q9H2Z4 354 aa16.77■□□□□ 0.28
LINC00661-203ENST00000549131 COL4A4P53420 1690 aaPredicted RBP16.76■□□□□ 0.27
LINC00661-203ENST00000549131 CPLX1O14810 134 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 MAFGO15525 162 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 TREHO43280 583 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 PARNO95453 639 aaKnown RBP16.76■□□□□ 0.27
LINC00661-203ENST00000549131 IFNAR1P17181 557 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 MARK3P27448 753 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 HOXC8P31273 242 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 THPOP40225 353 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 ARHGAP4P98171 946 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 STK3Q13188 491 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 GRIN2CQ14957 1233 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 TRIM22Q8IYM9 498 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 LMBR1Q8WVP7 490 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 SEPT1Q8WYJ6 367 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 GLG1Q92896 1179 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 SLC9A7Q96T83 725 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 LARP6Q9BRS8 491 aaKnown RBP16.76■□□□□ 0.27
LINC00661-203ENST00000549131 ZMYND12Q9H0C1 365 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 RNPEPQ9H4A4 650 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 PDRG1Q9NUG6 133 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 SETD4Q9NVD3 440 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 SLC9A2Q9UBY0 812 aa16.76■□□□□ 0.27
LINC00661-203ENST00000549131 YBX2Q9Y2T7 364 aaKnown RBP16.76■□□□□ 0.27
LINC00661-203ENST00000549131 CHD7Q9P2D1 2997 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 GSTTP1A0A1W2PQM5 241 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 NBNO60934 754 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 BAIAP3O94812 1187 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 CTSHP09668 335 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 ARP10275 920 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 GNAT1P11488 350 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 GNA11P29992 359 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 KCNJ6P48051 423 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 CNKSR3Q6P9H4 555 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 SLC17A8Q8NDX2 589 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 SLC28A3Q9HAS3 691 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 ERAP1Q9NZ08 941 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 VPS54Q9P1Q0 977 aa16.75■□□□□ 0.27
LINC00661-203ENST00000549131 NFASCO94856 1347 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 EMSYQ7Z589 1322 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 ADAMTS3O15072 1205 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 PPFIA1Q13136 1202 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 ITGB3BPQ13352 177 aaPredicted RBP16.74■□□□□ 0.27
LINC00661-203ENST00000549131 PPP2R2DQ66LE6 453 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 MCTP2Q6DN12 878 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 TRAF7Q6Q0C0 670 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 MAFAQ8NHW3 353 aaPredicted RBP16.74■□□□□ 0.27
LINC00661-203ENST00000549131 BICD2Q8TD16 824 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 RASGRP4Q8TDF6 673 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 AGO4Q9HCK5 861 aaKnown RBP16.74■□□□□ 0.27
LINC00661-203ENST00000549131 PCDHA11Q9Y5I1 949 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 UNC80Q8N2C7 3258 aa16.74■□□□□ 0.27
LINC00661-203ENST00000549131 NRCAMQ92823 1304 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 RSPH10B2B2RC85 870 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 FAM86B1E9PN63 330 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 DDX39AO00148 427 aaKnown RBP16.73■□□□□ 0.27
LINC00661-203ENST00000549131 CXCL10P02778 98 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 FAM86B2P0C5J1 330 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 RSPH10BP0C881 870 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 MYOGP15173 224 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 WDR5P61964 334 aaKnown RBP16.73■□□□□ 0.27
LINC00661-203ENST00000549131 SSRP1Q08945 709 aaKnown RBP16.73■□□□□ 0.27
LINC00661-203ENST00000549131 MBTPS1Q14703 1052 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 GPNMBQ14956 572 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 CPLX2Q6PUV4 134 aaKnown RBP16.73■□□□□ 0.27
LINC00661-203ENST00000549131 PLA2G4DQ86XP0 818 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 ZNF274Q96GC6 653 aaPredicted RBP16.73■□□□□ 0.27
LINC00661-203ENST00000549131 SMARCAD1Q9H4L7 1026 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 AZI2Q9H6S1 392 aa16.73■□□□□ 0.27
LINC00661-203ENST00000549131 RBAK-RBAKDNI3L0D1 243 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 MEIS1O00470 390 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 ACTR2P61160 394 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 SETQ01105 290 aaPredicted RBP16.72■□□□□ 0.27
LINC00661-203ENST00000549131 GRIK4Q16099 956 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 NIPA1Q7RTP0 329 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 GAS2L1Q99501 681 aaPredicted RBP16.72■□□□□ 0.27
LINC00661-203ENST00000549131 PRDM12Q9H4Q4 367 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 TUBE1Q9UJT0 475 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 TRPC6Q9Y210 931 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 TRANK1O15050 2925 aa16.72■□□□□ 0.27
LINC00661-203ENST00000549131 NLRC5Q86WI3 1866 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 PRUNE2Q8WUY3 3088 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 EVPLQ92817 2033 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 IGLV3-22A0A075B6J6 115 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 CAND2O75155 1236 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 LGR5O75473 907 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 DEXIO95424 95 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 CA3P07451 260 aa16.71■□□□□ 0.27
LINC00661-203ENST00000549131 CYP3A4P08684 503 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms