RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 SSH2Q76I76 1423 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 TFDP1Q14186 410 aa16.64■□□□□ 0.26
CHD4-210ENST00000544040 LSG1Q9H089 658 aaKnown RBP16.64■□□□□ 0.26
CHD4-210ENST00000544040 CPSF3Q9UKF6 684 aaKnown RBP16.64■□□□□ 0.26
CHD4-210ENST00000544040 MAPKBP1O60336 1514 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 TYW5A2RUC4 315 aaKnown RBP16.64■□□□□ 0.25
CHD4-210ENST00000544040 PDE6BP35913 854 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 FAM47EQ6ZV65 393 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 EXOC4Q96A65 974 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 FAM167BQ9BTA0 163 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 PITPNM3Q9BZ71 974 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 SLC13A4Q9UKG4 626 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 PRPSAP2O60256 369 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 SRGAP2O75044 1071 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 MMEP08473 750 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 ADORA1P30542 326 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 FLOT2Q14254 428 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 ALS2CLQ60I27 953 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 FBXO18Q8NFZ0 1043 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 TRIM15Q9C019 465 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 TEKT2Q9UIF3 430 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 ENOX1Q8TC92 643 aaKnown RBP16.64■□□□□ 0.25
CHD4-210ENST00000544040 MLXIPLQ9NP71 852 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 BABAM1Q9NWV8 329 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 NOP53Q9NZM5 478 aaKnown RBP16.64■□□□□ 0.25
CHD4-210ENST00000544040 NUP160Q12769 1436 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 A0A1W2PQ27 194 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 A0A1W2PQ64 194 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 A0A1W2PQD8 194 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 SYCE1LA8MT33 242 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 GYG2O15488 501 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 ZNF18P17022 549 aa16.64■□□□□ 0.25
CHD4-210ENST00000544040 IQANK1A0A1B0GTG1 560 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 GTPBP10A4D1E9 387 aaKnown RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 SERPING1P05155 500 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 KPNA2P52292 529 aaKnown RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 TTLL11Q8NHH1 800 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 SLC5A4Q9NY91 659 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 GOLGA8IPA6NC78 632 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 GOLGA8JA6NMD2 632 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 NDUFA10O95299 355 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 SLFN14P0C7P3 912 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 PMLP29590 882 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 ATP6V1E1P36543 226 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 TMPRSS15P98073 1019 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 BEND6Q5SZJ8 279 aaPredicted RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 MCTP2Q6DN12 878 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 CRLF3Q8IUI8 442 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 EIF2AK4Q9P2K8 1649 aaKnown RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 E2F6O75461 281 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 GIPC2Q8TF65 315 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 SAYSD1Q9NPB0 183 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 TLR7Q9NYK1 1049 aaKnown RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 F5H423 210 aaPredicted RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 GOLGA8MH3BSY2 632 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 CAPRIN1Q14444 709 aaKnown RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 RNF207Q6ZRF8 634 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 ARMC9Q7Z3E5 817 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 FAF2Q96CS3 445 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.63■□□□□ 0.259e-10■□□□□ 8.5
CHD4-210ENST00000544040 THOC2Q8NI27 1593 aaKnown RBP16.63■□□□□ 0.25
CHD4-210ENST00000544040 ATP2B4P23634 1241 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 ABCB5Q2M3G0 1257 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 C6orf118Q5T5N4 469 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 TBCKQ8TEA7 893 aa16.63■□□□□ 0.25
CHD4-210ENST00000544040 RFX8Q6ZV50 586 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 HEXIM2Q96MH2 286 aaKnown RBP16.62■□□□□ 0.25
CHD4-210ENST00000544040 CCDC90BQ9GZT6 254 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 HLA-DPA1P20036 260 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 TRAPPC10P48553 1259 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 CHRNDQ07001 517 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 TTLL7Q6ZT98 887 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 USP44Q9H0E7 712 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 FOXP1Q9H334 677 aaPredicted RBP16.62■□□□□ 0.25
CHD4-210ENST00000544040 MAN1A2O60476 641 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 ALDH1B1P30837 517 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 OCA2Q04671 838 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 NR5A1Q13285 461 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 MAGEF1Q9HAY2 307 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 MRPL47Q9HD33 250 aaKnown RBP16.62■□□□□ 0.25
CHD4-210ENST00000544040 FAM8A1Q9UBU6 413 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 RWDD2AQ9UIY3 292 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 DNMBPQ6XZF7 1577 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 IKBKBO14920 756 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 HSPA8P11142 646 aaKnown RBP16.62■□□□□ 0.25
CHD4-210ENST00000544040 EPHB1P54762 984 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 CENPUQ71F23 418 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 ABCC12Q96J65 1359 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 FGGP02679 453 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 BLVRAP53004 296 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 ACTN3Q08043 901 aaPredicted RBP16.62■□□□□ 0.25
CHD4-210ENST00000544040 KCNA1Q09470 495 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 METTL23Q86XA0 190 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 C19orf44Q9H6X5 657 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 ZBED1O96006 694 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 SMAD1Q15797 465 aaKnown RBP16.62■□□□□ 0.25
CHD4-210ENST00000544040 STRIP2Q9ULQ0 834 aa16.62■□□□□ 0.25
CHD4-210ENST00000544040 CHEK2O96017 543 aa16.61■□□□□ 0.25
CHD4-210ENST00000544040 HADHAP40939 763 aa16.61■□□□□ 0.25
CHD4-210ENST00000544040 PMS1P54277 932 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms