RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 KCNA2P16389 499 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 CDC25AP30304 524 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 PRPHP41219 470 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 ADCYAP1R1P41586 468 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 CENPFP49454 3210 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 LBX1P52954 281 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 IRF5Q13568 498 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 ARHGEF6Q15052 776 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 GJC2Q5T442 439 aaPredicted RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 LRCH2Q5VUJ6 765 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 ARL6IP4Q66PJ3 421 aaKnown RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 CCDC62Q6P9F0 684 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 USP49Q70CQ1 688 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 SLFN12Q8IYM2 578 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 KRI1Q8N9T8 703 aaKnown RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 TMEM87AQ8NBN3 555 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 RAET1EQ8TD07 263 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 FERMT2Q96AC1 680 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 FAM20AQ96MK3 541 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 UNC45AQ9H3U1 944 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 ABHD16BQ9H3Z7 469 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 TTC12Q9H892 705 aaPredicted RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 VTA1Q9NP79 307 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 DDX41Q9UJV9 622 aaKnown RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 VAV3Q9UKW4 847 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 ZHX1Q9UKY1 873 aaPredicted RBP10.54□□□□□ -0.72
DDX55-208ENST00000541259 PCDHA12Q9UN75 941 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 PTCH2Q9Y6C5 1203 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 ELP1O95163 1332 aa10.54□□□□□ -0.72
DDX55-208ENST00000541259 HTTP42858 3142 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 POTEMA6NI47 508 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 EML1O00423 815 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 MAFGO15525 162 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 ADCY6O43306 1168 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 GAS7O60861 476 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 CUTAO60888 179 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 TXNP10599 105 aaKnown RBP10.53□□□□□ -0.72
DDX55-208ENST00000541259 SMPD1P17405 629 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 UBA1P22314 1058 aaKnown RBP10.53□□□□□ -0.72
DDX55-208ENST00000541259 CACNB2Q08289 660 aaPredicted RBP10.53□□□□□ -0.72
DDX55-208ENST00000541259 SPIRE1Q08AE8 756 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 CCDC144BQ3MJ40 725 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 SHC4Q6S5L8 630 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 B3GNT9Q6UX72 402 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 CYFIP1Q7L576 1253 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 CDHR1Q96JP9 859 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 PTPN22Q9Y2R2 807 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 FRMPD3Q5JV73 1810 aa10.53□□□□□ -0.72
DDX55-208ENST00000541259 KAT6AQ92794 2004 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 CHMP2AO43633 222 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 GGPS1O95749 300 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 CCNE2O96020 404 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 TGFB3P10600 412 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 CYBAP13498 195 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 HOXB3P14651 431 aaPredicted RBP10.52□□□□□ -0.73
DDX55-208ENST00000541259 LONP1P36776 959 aaKnown RBP10.52□□□□□ -0.73
DDX55-208ENST00000541259 CTCFP49711 727 aaPredicted RBP10.52□□□□□ -0.73
DDX55-208ENST00000541259 PRMT2P55345 433 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 SP4Q02446 784 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 PDIA5Q14554 519 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 TTLL4Q14679 1199 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 CSPP1Q1MSJ5 1256 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 TMEM266Q2M3C6 531 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 MFSD14CQ5VZR4 134 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 ADALQ6DHV7 355 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 NCAPH2Q6IBW4 605 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 TRMT44Q8IYL2 757 aaKnown RBP10.52□□□□□ -0.73
DDX55-208ENST00000541259 IGSF22Q8N9C0 903 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 SCFD2Q8WU76 684 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 LENG1Q96BZ8 264 aaPredicted RBP10.52□□□□□ -0.73
DDX55-208ENST00000541259 EPSTI1Q96J88 318 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 RIT2Q99578 217 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 SENP7Q9BQF6 1050 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 TEKT3Q9BXF9 490 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 GOLPH3LQ9H4A5 285 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 TBC1D22BQ9NU19 505 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 LRWD1Q9UFC0 647 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 NFASCO94856 1347 aa10.52□□□□□ -0.73
DDX55-208ENST00000541259 A0A1B0GVL5 298 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 FARP2O94887 1054 aaPredicted RBP10.51□□□□□ -0.73
DDX55-208ENST00000541259 HMGCRP04035 888 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 CCND3P30281 292 aaPredicted RBP10.51□□□□□ -0.73
DDX55-208ENST00000541259 GRK4P32298 578 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 TNFAIP2Q03169 654 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 PPP2R5CQ13362 524 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 NEDD9Q14511 834 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 NFKBIBQ15653 356 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 CELF3Q5SZQ8 465 aaKnown RBP10.51□□□□□ -0.73
DDX55-208ENST00000541259 RESP18Q5W5W9 173 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 IQSEC1Q6DN90 963 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 KCNV1Q6PIU1 500 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 PXYLP1Q8TE99 480 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 SH3TC2Q8TF17 1288 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 DDX12PQ92771 950 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 SYMPKQ92797 1274 aaKnown RBP10.51□□□□□ -0.73
DDX55-208ENST00000541259 SDF4Q9BRK5 362 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 MMTAG2Q9BU76 263 aaKnown RBP10.51□□□□□ -0.73
DDX55-208ENST00000541259 PANK2Q9BZ23 570 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 SLC9A2Q9UBY0 812 aa10.51□□□□□ -0.73
DDX55-208ENST00000541259 A0A087WWV3 80 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms