RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 FOXD4L4Q8WXT5 416 aaPredicted RBP9.56□□□□□ -0.88
CHD4-208ENST00000540960 DDX11Q96FC9 970 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 MSLNLQ96KJ4 702 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 FGD4Q96M96 766 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 TRIM34Q9BYJ4 488 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 KATNBL1Q9H079 304 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 SMOC2Q9H3U7 446 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 INCENPQ9NQS7 918 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 BRPF3Q9ULD4 1205 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.56□□□□□ -0.88
CHD4-208ENST00000540960 R4GN57 208 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 NAV2Q8IVL1 2488 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 FRYQ5TBA9 3013 aa9.56□□□□□ -0.88
CHD4-208ENST00000540960 ZZEF1O43149 2961 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 FLOT1O75955 427 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 EYA4O95677 639 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 CAVIN2O95810 425 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 SLC25A27O95847 323 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 TSPY3P0CV98 308 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 TSPY8P0CW00 308 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 SMARCA1P28370 1054 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 RESTQ13127 1097 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 KIAA0319Q5VV43 1072 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 ASTLQ6HA08 431 aaPredicted RBP9.55□□□□□ -0.88
CHD4-208ENST00000540960 TATDN1Q6P1N9 297 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 MICU3Q86XE3 530 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 MB21D1Q8N884 522 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 CCDC34Q96HJ3 373 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 CCDC17Q96LX7 622 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 HINFPQ9BQA5 517 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 ALG1Q9BT22 464 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 KAT14Q9H8E8 782 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 DDX19AQ9NUU7 478 aaKnown RBP9.55□□□□□ -0.88
CHD4-208ENST00000540960 CLEC1BQ9P126 229 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 DACH1Q9UI36 760 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 CEP131Q9UPN4 1083 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 GNEQ9Y223 722 aaKnown RBP9.55□□□□□ -0.88
CHD4-208ENST00000540960 FLT1P17948 1338 aa9.55□□□□□ -0.88
CHD4-208ENST00000540960 DNAJC25-GNG10A0A024R161 153 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 SOBPA7XYQ1 873 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 DYNC1LI2O43237 492 aaPredicted RBP9.54□□□□□ -0.88
CHD4-208ENST00000540960 PI15O43692 258 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 JAK2O60674 1132 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 CSPG5O95196 566 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 CTDNEP1O95476 244 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 YEATS4O95619 227 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 SUPT20HL2P0C7V6 817 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 CALML3P27482 149 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 DNM1Q05193 864 aaKnown RBP9.54□□□□□ -0.88
CHD4-208ENST00000540960 ADAM15Q13444 863 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 ANGPT1Q15389 498 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 SEC23AQ15436 765 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 SF3A1Q15459 793 aaKnown RBP9.54□□□□□ -0.88
CHD4-208ENST00000540960 GALNT17Q6IS24 598 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.54□□□□□ -0.885e-11■■■■■ 32.8
CHD4-208ENST00000540960 RIOX2Q8IUF8 465 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 MSL3Q8N5Y2 521 aaKnown RBP9.54□□□□□ -0.88
CHD4-208ENST00000540960 RETREG2Q8NC44 543 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 CYP2W1Q8TAV3 490 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 CCDC12Q8WUD4 166 aaPredicted RBP9.54□□□□□ -0.88
CHD4-208ENST00000540960 ABHD16BQ9H3Z7 469 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 NCOA5Q9HCD5 579 aaKnown RBP9.54□□□□□ -0.88
CHD4-208ENST00000540960 RCOR1Q9UKL0 485 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 MICAL3Q7RTP6 2002 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 MYH1P12882 1939 aa9.54□□□□□ -0.88
CHD4-208ENST00000540960 FSD2A1L4K1 749 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 PRPF3O43395 683 aaKnown RBP9.53□□□□□ -0.88
CHD4-208ENST00000540960 FIBPO43427 364 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 NCK2O43639 380 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 ATXN8OSP0DMR3 200 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 STAT3P40763 770 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 TFAP4Q01664 338 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 TNFAIP2Q03169 654 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 SEPT2Q15019 361 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 ABCB5Q2M3G0 1257 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 ZSCAN23Q3MJ62 389 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 CAVIN1Q6NZI2 390 aaKnown RBP9.53□□□□□ -0.88
CHD4-208ENST00000540960 CCDC73Q6ZRK6 1079 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 C16orf86Q6ZW13 317 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 TLK2Q86UE8 772 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 TMEM192Q8IY95 271 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 SPICE1Q8N0Z3 855 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 ENAHQ8N8S7 591 aaPredicted RBP9.53□□□□□ -0.88
CHD4-208ENST00000540960 NEDD1Q8NHV4 660 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 LEO1Q8WVC0 666 aaPredicted RBP9.53□□□□□ -0.88
CHD4-208ENST00000540960 GZF1Q9H116 711 aaPredicted RBP9.53□□□□□ -0.88
CHD4-208ENST00000540960 EHD4Q9H223 541 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 FOXP1Q9H334 677 aaPredicted RBP9.53□□□□□ -0.88
CHD4-208ENST00000540960 SH3GLB2Q9NR46 395 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 FBXO28Q9NVF7 368 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 POLR3EQ9NVU0 708 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 RTEL1Q9NZ71 1219 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 ADAMTS5Q9UNA0 930 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 USP15Q9Y4E8 981 aaPredicted RBP9.53□□□□□ -0.88
CHD4-208ENST00000540960 RIPK3Q9Y572 518 aa9.53□□□□□ -0.88
CHD4-208ENST00000540960 A0A1W2PQ27 194 aa9.52□□□□□ -0.89
CHD4-208ENST00000540960 A0A1W2PQ64 194 aa9.52□□□□□ -0.89
CHD4-208ENST00000540960 A0A1W2PQD8 194 aa9.52□□□□□ -0.89
CHD4-208ENST00000540960 hCG_1984214I3L0E3 225 aa9.52□□□□□ -0.89
CHD4-208ENST00000540960 PITPNM1O00562 1244 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms