RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 BMPR1AP36894 532 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 MRE11P49959 708 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 TROAPQ12815 778 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 HERC4Q5GLZ8 1057 aaPredicted RBP8.47□□□□□ -1.05
YBX3-209ENST00000540747 IFIT1BQ5T764 474 aaKnown RBP8.47□□□□□ -1.05
YBX3-209ENST00000540747 CWC27Q6UX04 472 aaKnown RBP8.47□□□□□ -1.05
YBX3-209ENST00000540747 HFE2Q6ZVN8 426 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 LINC01599Q8WXQ3 324 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 RILPL2Q969X0 211 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 ZNF689Q96CS4 500 aaPredicted RBP8.47□□□□□ -1.05
YBX3-209ENST00000540747 IL17RAQ96F46 866 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 PIGSQ96S52 555 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 SENP7Q9BQF6 1050 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 UBAC1Q9BSL1 405 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 CNNM2Q9H8M5 875 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 MLXIPQ9HAP2 919 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 SENP2Q9HC62 589 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 ADGRA3Q8IWK6 1321 aa8.47□□□□□ -1.05
YBX3-209ENST00000540747 ZFHX2Q9C0A1 2572 aaPredicted RBP8.47□□□□□ -1.05
YBX3-209ENST00000540747 PNMA6FA0A0J9YX94 578 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 FIBPO43427 364 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 MBTPS2O43462 519 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 UPP2O95045 317 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 MMP1P03956 469 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 NEDD9Q14511 834 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 LPIN1Q14693 890 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 IMMTQ16891 758 aaKnown RBP8.46□□□□□ -1.06
YBX3-209ENST00000540747 RUFY4Q6ZNE9 571 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 CYFIP1Q7L576 1253 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 FIBCD1Q8N539 461 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 MSLNLQ96KJ4 702 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 C11orf84Q9BUA3 381 aaPredicted RBP8.46□□□□□ -1.06
YBX3-209ENST00000540747 ALG13Q9NP73 1137 aaKnown RBP8.46□□□□□ -1.06
YBX3-209ENST00000540747 CLDND1Q9NY35 253 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 ZBTB47Q9UFB7 747 aaPredicted RBP8.46□□□□□ -1.06
YBX3-209ENST00000540747 FAM50BQ9Y247 325 aa8.46□□□□□ -1.06
YBX3-209ENST00000540747 SUPT16HQ9Y5B9 1047 aaKnown RBP8.46□□□□□ -1.06
YBX3-209ENST00000540747 SPTBN4Q9H254 2564 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 HIP1O00291 1037 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 PIK3CDO00329 1044 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 NOP56O00567 594 aaKnown RBP8.45□□□□□ -1.06
YBX3-209ENST00000540747 ENPP3O14638 875 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 EYA4O95677 639 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 GHRP10912 638 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 GNAT1P11488 350 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 CTNNB1P35222 781 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 GTF2F1P35269 517 aaKnown RBP eCLIP8.45□□□□□ -1.06
YBX3-209ENST00000540747 NUCB1Q02818 461 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 TRAF1Q13077 416 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 ADAM15Q13444 863 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 SMAD4Q13485 552 aaKnown RBP8.45□□□□□ -1.06
YBX3-209ENST00000540747 GNPTABQ3T906 1256 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 FBXO47Q5MNV8 452 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 MARCH8Q5T0T0 291 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 PCNX4Q63HM2 1172 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 TAF2Q6P1X5 1199 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 XRRA1Q6P2D8 792 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 BMP8AQ7Z5Y6 402 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 CHD1LQ86WJ1 897 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 FCHSD1Q86WN1 690 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 HOMER1Q86YM7 354 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 PLVAPQ9BX97 442 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 DIAPH3Q9NSV4 1193 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 RWDD3Q9Y3V2 267 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 TAF6LQ9Y6J9 622 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 NRCAMQ92823 1304 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 DOCK5Q9H7D0 1870 aa8.45□□□□□ -1.06
YBX3-209ENST00000540747 WDR87Q6ZQQ6 2873 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 GSTTP1A0A1W2PQM5 241 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 MEIS2O14770 477 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 LINC01565O15544 149 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 DGKIO75912 1065 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 KCNA2P16389 499 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 DNAJB1P25685 340 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 ANTXR2P58335 489 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 ARHGAP4P98171 946 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 AAMPQ13685 434 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 CBX2Q14781 532 aaPredicted RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 CSPP1Q1MSJ5 1256 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 RTN4RL1Q86UN2 441 aaPredicted RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 RNF135Q8IUD6 432 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 SMRP1Q8NCR6 262 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 P2RX5Q93086 422 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 UIMC1Q96RL1 719 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 POP1Q99575 1024 aaKnown RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 UPF3BQ9BZI7 483 aaKnown RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 AGO3Q9H9G7 860 aaKnown RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 CLEC1BQ9P126 229 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 MUTYHQ9UIF7 546 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 ZNF215Q9UL58 517 aaPredicted RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 PLAGL2Q9UPG8 496 aa8.44□□□□□ -1.06
YBX3-209ENST00000540747 MRPL42Q9Y6G3 142 aaKnown RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 RIF1Q5UIP0 2472 aaKnown RBP8.44□□□□□ -1.06
YBX3-209ENST00000540747 MYO15AQ9UKN7 3530 aa8.43□□□□□ -1.06
YBX3-209ENST00000540747 LOC730098B7Z3J9 87 aa8.43□□□□□ -1.06
YBX3-209ENST00000540747 ATP9AO75110 1047 aa8.43□□□□□ -1.06
YBX3-209ENST00000540747 GLP2RO95838 553 aa8.43□□□□□ -1.06
YBX3-209ENST00000540747 IGHDP01880 384 aa8.43□□□□□ -1.06
YBX3-209ENST00000540747 ITGB1P05556 798 aa8.43□□□□□ -1.06
YBX3-209ENST00000540747 NEFLP07196 543 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms