RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 AK2P54819 239 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 SCRN1Q12765 414 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 TRIM71Q2Q1W2 868 aaKnown RBP13.45□□□□□ -0.26
SYNE1-238ENST00000540663 ZNF697Q5TEC3 545 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 LRRC8DQ7L1W4 858 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 PLA2G4DQ86XP0 818 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 TRIM50Q86XT4 487 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 DAGLBQ8NCG7 672 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 CYP2W1Q8TAV3 490 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 ATP6V0A1Q93050 837 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 VWCEQ96DN2 955 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 MTMR10Q9NXD2 777 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 ERAP1Q9NZ08 941 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 PKD2L1Q9P0L9 805 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 TPCN1Q9ULQ1 816 aa13.45□□□□□ -0.26
SYNE1-238ENST00000540663 NRCAMQ92823 1304 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 IGLV3-22A0A075B6J6 115 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 FAM86B1E9PN63 330 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 PPFIA3O75145 1194 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 LGR5O75473 907 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 FAM86B2P0C5J1 330 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 ARP10275 920 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 XBP1P17861 261 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 CIITAP33076 1130 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 USP11P51784 963 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 ITGB3BPQ13352 177 aaPredicted RBP13.44□□□□□ -0.26
SYNE1-238ENST00000540663 Q7L0L9 218 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 OTOP2Q7RTS6 562 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 DEFB128Q7Z7B8 93 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 GLG1Q92896 1179 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 TNPO1Q92973 898 aaKnown RBP13.44□□□□□ -0.26
SYNE1-238ENST00000540663 RNPEPQ9H4A4 650 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 AZI2Q9H6S1 392 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 PCDHA4Q9UN74 947 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 SLC4A7Q9Y6M7 1214 aa13.44□□□□□ -0.26
SYNE1-238ENST00000540663 IPO5O00410 1097 aaKnown RBP13.43□□□□□ -0.26
SYNE1-238ENST00000540663 BAIAP3O94812 1187 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 SEC24BO95487 1268 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 CXCL10P02778 98 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 RPLP2P05387 115 aaKnown RBP13.43□□□□□ -0.26
SYNE1-238ENST00000540663 DNAJB2P25686 324 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 SLC26A2P50443 739 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 NEK4P51957 841 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 ACTR2P61160 394 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 ZNF200P98182 395 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-238ENST00000540663 HIC1Q14526 733 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 RAB30Q15771 203 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 PLPPR4Q7Z2D5 763 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 BLIDQ8IZY5 108 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 WASF1Q92558 559 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 FTOQ9C0B1 505 aaKnown RBP eCLIP13.43□□□□□ -0.26
SYNE1-238ENST00000540663 TBC1D22BQ9NU19 505 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 CXXC1Q9P0U4 656 aaPredicted RBP13.43□□□□□ -0.26
SYNE1-238ENST00000540663 TELO2Q9Y4R8 837 aa13.43□□□□□ -0.26
SYNE1-238ENST00000540663 CHD9Q3L8U1 2897 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 ZBBXA8MT70 800 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 ADAMTS3O15072 1205 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 EFCAB14O75071 495 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 ATG7O95352 703 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 THPOP40225 353 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 ADAM17P78536 824 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 PPFIA1Q13136 1202 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 C8orf34Q49A92 452 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 ZNF618Q5T7W0 954 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 CNKSR3Q6P9H4 555 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 RASGRP4Q8TDF6 673 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 LMBR1Q8WVP7 490 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 GTF3C6Q969F1 213 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 ZNF577Q9BSK1 485 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 SEMA6BQ9H3T3 888 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 SETD4Q9NVD3 440 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 TCEAL9Q9UHQ7 104 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 MSRAQ9UJ68 235 aa13.42□□□□□ -0.26
SYNE1-238ENST00000540663 SCN5AQ14524 2016 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 RRN3P2A6NIE6 340 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 RSPH10B2B2RC85 870 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 M0R2N6 131 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 DHX15O43143 795 aaKnown RBP13.41□□□□□ -0.26
SYNE1-238ENST00000540663 TREHO43280 583 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 RSPH10BP0C881 870 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 ATP2A2P16615 1042 aaKnown RBP13.41□□□□□ -0.26
SYNE1-238ENST00000540663 KRT76Q01546 638 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 PRR16Q569H4 304 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 FAM160B1Q5W0V3 765 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 ZNF746Q6NUN9 644 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-238ENST00000540663 TAF2Q6P1X5 1199 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 TRAF7Q6Q0C0 670 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 KRT25Q7Z3Z0 450 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 RPAINQ86UA6 219 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 PHOSPHO2Q8TCD6 241 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 WNT8BQ93098 351 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 TIFAQ96CG3 184 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 SLC9A7Q96T83 725 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 PCYT2Q99447 389 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 PHF20Q9BVI0 1012 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 ORC3Q9UBD5 711 aaPredicted RBP13.41□□□□□ -0.26
SYNE1-238ENST00000540663 STXBP5LQ9Y2K9 1186 aa13.41□□□□□ -0.26
SYNE1-238ENST00000540663 TRIP12Q14669 1992 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-238ENST00000540663 CYP3A7-CYP3A51PA0A087WV96 503 aa13.4□□□□□ -0.26
SYNE1-238ENST00000540663 IGKV6D-21A0A0A0MT36 114 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms