RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 KCNJ6P48051 423 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 TNNI2P48788 182 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 ZBED6P86452 979 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 CCZ1BP86790 482 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 CCZ1P86791 482 aaPredicted RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 LRRC8BQ6P9F7 803 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 CCNI2Q6ZMN8 369 aaPredicted RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 MCRS1Q96EZ8 462 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 CNOT6LQ96LI5 555 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 POLD4Q9HCU8 107 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 HDAC6Q9UBN7 1215 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 MAN1B1Q9UKM7 699 aa9.42□□□□□ -0.9
YBX3-208ENST00000540447 ANGEL1Q9UNK9 670 aaKnown RBP9.42□□□□□ -0.9
YBX3-208ENST00000540447 IQANK1A0A1B0GTG1 560 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 DNALI1O14645 258 aaPredicted RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 RPN1P04843 607 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 PPIDQ08752 370 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 DCTN2Q13561 401 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 KRR1Q13601 381 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 HERC4Q5GLZ8 1057 aaPredicted RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 ARMCX5Q6P1M9 558 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 ZNF554Q86TJ5 538 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 SFR1Q86XK3 245 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 CROCCP3Q8IVE0 287 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 SIX6OS1Q8N1H7 587 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 TAB3Q8N5C8 712 aaPredicted RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 MYCBPAPQ8TBZ2 947 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 PARVGQ9HBI0 331 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 ATXN10Q9UBB4 475 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 ADGRG1Q9Y653 693 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 H3BRJ5 948 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 SERPINB2P05120 415 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 GOLGA8HP0CJ92 632 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 BYSLQ13895 437 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 DNAL1Q4LDG9 190 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 GPR141Q7Z602 305 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 NOP9Q86U38 636 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 PROSER2Q86WR7 435 aaPredicted RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 TRIM59Q8IWR1 403 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 PIGOQ8TEQ8 1089 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 ERP27Q96DN0 273 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 FAM129AQ9BZQ8 928 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 FAM96AQ9H5X1 160 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 TBC1D7Q9P0N9 293 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 AP4S1Q9Y587 144 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 PODXLO00592 558 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 ATP5JP18859 108 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 PAX3P23760 479 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 CCNHP51946 323 aaPredicted RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 KIF11P52732 1056 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 PRAMEP78395 509 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 RINT1Q6NUQ1 792 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 CABP7Q86V35 215 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 KDM4CQ9H3R0 1056 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 SH3GLB1Q9Y371 365 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 MSH6P52701 1360 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 COBLO75128 1261 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 ATP6V1G1O75348 118 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 UQCRFS1P1P0C7P4 283 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 SLC9C2Q5TAH2 1124 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 PLEKHA7Q6IQ23 1121 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 CADPS2Q86UW7 1296 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 MRPS26Q9BYN8 205 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 FHDC1Q9C0D6 1143 aaPredicted RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 CACYBPQ9HB71 228 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 TRIM39Q9HCM9 518 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 TRPC7Q9HCX4 862 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 SNX24Q9Y343 169 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 KRT6AP02538 564 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 SLC4A1P02730 911 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 KRT6BP04259 564 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 TMOD1P28289 359 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 HMOX2P30519 316 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 RFC5P40937 340 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 KRT6CP48668 564 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 NUP107P57740 925 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 MESDQ14696 234 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 AGBL2Q5U5Z8 902 aa9.41□□□□□ -0.9
YBX3-208ENST00000540447 DDX18Q9NVP1 670 aaKnown RBP9.41□□□□□ -0.9
YBX3-208ENST00000540447 H3BQF6 201 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 CLPTM1O96005 669 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 GSTT1P30711 240 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 RSBN1Q5VWQ0 802 aaPredicted RBP9.4□□□□□ -0.9
YBX3-208ENST00000540447 ARMC3Q5W041 872 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 APOA5Q6Q788 366 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 JDP2Q8WYK2 163 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 TRIM8Q9BZR9 551 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 NRDE2Q9H7Z3 1164 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 RCOR1Q9UKL0 485 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 KCNJ14Q9UNX9 436 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 CDHR2Q9BYE9 1310 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 TNNC2P02585 160 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 XRCC5P13010 732 aaKnown RBP9.4□□□□□ -0.9
YBX3-208ENST00000540447 WASHC5Q12768 1159 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 TRIM25Q14258 630 aaKnown RBP9.4□□□□□ -0.9
YBX3-208ENST00000540447 KDM7AQ6ZMT4 941 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 GIPC2Q8TF65 315 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 CAPSLQ8WWF8 208 aa9.4□□□□□ -0.9
YBX3-208ENST00000540447 TRAPPC9Q96Q05 1148 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms