RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 GABBR1Q9UBS5 961 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 RIPOR2Q9Y4F9 1068 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 SNAPC4Q5SXM2 1469 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 PCF11O94913 1555 aaKnown RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 SLC12A8A0AV02 714 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 ZNF503-AS2A6NEH8 195 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 CLASP2O75122 1294 aaKnown RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 HIP1RO75146 1068 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 PYGMP11217 842 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 KCNA6P17658 529 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 EXOSC10Q01780 885 aaKnown RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 DHCR24Q15392 516 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 BRDTQ58F21 947 aaPredicted RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 HHIPL2Q6UWX4 724 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 OVCH1Q7RTY7 1134 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 ZC3H18Q86VM9 953 aaKnown RBP4.67□□□□□ -1.66
CSMD3-210ENST00000534172 FAM126BQ8IXS8 530 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 CHST14Q8NCH0 376 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 ALG3Q92685 438 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 DDX11Q96FC9 970 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 B4GALT6Q9UBX8 382 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 FBXL7Q9UJT9 491 aa4.67□□□□□ -1.66
CSMD3-210ENST00000534172 CARMIL2Q6F5E8 1435 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 SYNJ1O43426 1573 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 LOC102724159A0A0B4J2E5 919 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PDE8AO60658 829 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 GAS7O60861 476 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 JMJD7P0C870 316 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 SCNN1BP51168 640 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 SRSF3P84103 164 aaKnown RBP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PRR5P85299 388 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PWP2Q15269 919 aaKnown RBP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 CT47A1Q5JQC4 288 aaPredicted RBP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PIK3R6Q5UE93 754 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 ARHGAP36Q6ZRI8 547 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 OTOP1Q7RTM1 612 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 DDX42Q86XP3 938 aaKnown RBP eCLIP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 IGSF22Q8N9C0 903 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PIP4K2CQ8TBX8 421 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 YIPF4Q9BSR8 244 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PALD1Q9ULE6 856 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 ATP23Q9Y6H3 246 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 EIF4G3O43432 1585 aaKnown RBP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PLEKHD1A6NEE1 506 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 GSG1L2A8MUP6 293 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 ZNF561-AS1K7EIQ3 104 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 CBX4O00257 560 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 SGSM2O43147 1006 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 TPD52L2O43399 206 aaKnown RBP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 FAPQ12884 760 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 KIR3DS1Q14943 382 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 MLANAQ16655 118 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 KCTD1Q719H9 257 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 MILR1Q7Z6M3 343 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 ZNF605Q86T29 641 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 AMIGO3Q86WK7 504 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 MIB1Q86YT6 1006 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 RAVER1Q8IY67 606 aaKnown RBP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 UBR7Q8N806 425 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 FAM84AQ96KN4 292 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 SLC38A3Q99624 504 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 BOCQ9BWV1 1114 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 PPARGC1AQ9UBK2 798 aaKnown RBP4.66□□□□□ -1.66
CSMD3-210ENST00000534172 SRPK3Q9UPE1 567 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 EID1Q9Y6B2 187 aa4.66□□□□□ -1.66
CSMD3-210ENST00000534172 M0R2C6 588 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 PEX14O75381 377 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 FARP2O94887 1054 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-210ENST00000534172 EFEMP2O95967 443 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 NFKB2Q00653 900 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 ZNF174Q15697 407 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 RGL3Q3MIN7 710 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 TMC6Q7Z403 805 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-210ENST00000534172 TOE1Q96GM8 510 aaKnown RBP4.65□□□□□ -1.66
CSMD3-210ENST00000534172 LIN37Q96GY3 246 aaPredicted RBP4.65□□□□□ -1.66
CSMD3-210ENST00000534172 PKNOX2Q96KN3 472 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 WRNIP1Q96S55 665 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 TARS2Q9BW92 718 aaKnown RBP4.65□□□□□ -1.66
CSMD3-210ENST00000534172 MAPKBP1O60336 1514 aa4.65□□□□□ -1.66
CSMD3-210ENST00000534172 TCRBV5S2A0A599 114 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 H7C1D1 291 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 PDE6AP16499 860 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 VIPR1P32241 457 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 MECP2P51608 486 aaKnown RBP4.65□□□□□ -1.67
CSMD3-210ENST00000534172 TBX4P57082 545 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 FAM50AQ14320 339 aaKnown RBP4.65□□□□□ -1.67
CSMD3-210ENST00000534172 ETV3LQ6ZN32 361 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 RNF180Q86T96 592 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 TICAM2Q86XR7 235 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 ACSS2Q9NR19 701 aa4.65□□□□□ -1.67
CSMD3-210ENST00000534172 IRS2Q9Y4H2 1338 aa4.64□□□□□ -1.67
CSMD3-210ENST00000534172 ZEB2O60315 1214 aa4.64□□□□□ -1.67
CSMD3-210ENST00000534172 BRINP1O60477 761 aa4.64□□□□□ -1.67
CSMD3-210ENST00000534172 CYP7B1O75881 506 aa4.64□□□□□ -1.67
CSMD3-210ENST00000534172 TMEM253P0C7T8 217 aa4.64□□□□□ -1.67
CSMD3-210ENST00000534172 NKX3-2P78367 333 aa4.64□□□□□ -1.67
CSMD3-210ENST00000534172 CACNB2Q08289 660 aaPredicted RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms