RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ADAM17P78536 824 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 SETQ01105 290 aaPredicted RBP14.75□□□□□ -0.05
VPS28-216ENST00000533806 SP4Q02446 784 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 NONOQ15233 471 aaKnown RBP eCLIP14.75□□□□□ -0.05
VPS28-216ENST00000533806 Q4G0T1 1027 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 PRR16Q569H4 304 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 FAM47CQ5HY64 1035 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 EARS2Q5JPH6 523 aaKnown RBP14.75□□□□□ -0.05
VPS28-216ENST00000533806 TRIM50Q86XT4 487 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 C7orf31Q8N865 590 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 LBHD1Q9BQE6 289 aaPredicted RBP14.75□□□□□ -0.05
VPS28-216ENST00000533806 SDF4Q9BRK5 362 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 HIPK3Q9H422 1215 aa14.75□□□□□ -0.05
VPS28-216ENST00000533806 EMSYQ7Z589 1322 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 MSH4O15457 936 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 CYP2C18P33260 490 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 RBL2Q08999 1139 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 NR5A1Q13285 461 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 KRT40Q6A162 431 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 ABHD15Q6UXT9 468 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 C16orf59Q7L2K0 433 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 DHX38Q92620 1227 aaKnown RBP14.74□□□□□ -0.05
VPS28-216ENST00000533806 TMX3Q96JJ7 454 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 ZNF577Q9BSK1 485 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 UBE2OQ9C0C9 1292 aaKnown RBP14.74□□□□□ -0.05
VPS28-216ENST00000533806 WNT8AQ9H1J5 351 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 RNPEPQ9H4A4 650 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 TBC1D22BQ9NU19 505 aa14.74□□□□□ -0.05
VPS28-216ENST00000533806 MYH7BA7E2Y1 1941 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 BTBD18B2RXH4 712 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 PITPNM1O00562 1244 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 TDP2O95551 362 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 SMIM10L2AP0DMW4 78 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 SMIM10L2BP0DMW5 78 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 MCM2P49736 904 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 CHMP4BP1P59074 171 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 HMGN5P82970 282 aaKnown RBP14.73□□□□□ -0.05
VPS28-216ENST00000533806 ZNF200P98182 395 aaPredicted RBP14.73□□□□□ -0.05
VPS28-216ENST00000533806 FPGSQ05932 587 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 PTGISQ16647 500 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 INF2Q27J81 1249 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 TRIM71Q2Q1W2 868 aaKnown RBP14.73□□□□□ -0.05
VPS28-216ENST00000533806 UTP14CQ5TAP6 766 aaKnown RBP14.73□□□□□ -0.05
VPS28-216ENST00000533806 PPP4R3AQ6IN85 833 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 B3GNT9Q6UX72 402 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 TDHQ8IZJ6 230 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 SLC5A5Q92911 643 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 RIT2Q99578 217 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 SZT2Q5T011 3432 aa14.73□□□□□ -0.05
VPS28-216ENST00000533806 FAM205CA6NFA0 338 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 PSMD10O75832 226 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 CSF2RAP15509 400 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 KRT2P35908 639 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 PTK7Q13308 1070 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 C9orf50Q5SZB4 431 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 ZNF746Q6NUN9 644 aaPredicted RBP14.72□□□□□ -0.05
VPS28-216ENST00000533806 PIK3AP1Q6ZUJ8 805 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 PLPPR4Q7Z2D5 763 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 NEK8Q86SG6 692 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 SERINC5Q86VE9 423 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 FBXO18Q8NFZ0 1043 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 ETNPPLQ8TBG4 499 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 WNT8BQ93098 351 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 UIMC1Q96RL1 719 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 PPP1R12CQ9BZL4 782 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 SMARCAD1Q9H4L7 1026 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 ERAP1Q9NZ08 941 aa14.72□□□□□ -0.05
VPS28-216ENST00000533806 ZNF215Q9UL58 517 aaPredicted RBP14.72□□□□□ -0.05
VPS28-216ENST00000533806 CCDC194A0A1B0GVG4 234 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 GPNMBQ14956 572 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 SHHQ15465 462 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 LRIT3Q3SXY7 679 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 TRAF7Q6Q0C0 670 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 DIS3L2Q8IYB7 885 aaKnown RBP14.71□□□□□ -0.05
VPS28-216ENST00000533806 TMEM199Q8N511 208 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 AFAP1L1Q8TED9 768 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 KCNMB3Q9NPA1 279 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 SETD4Q9NVD3 440 aa14.71□□□□□ -0.05
VPS28-216ENST00000533806 NRCAMQ92823 1304 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 DOCK5Q9H7D0 1870 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 C17orf102A2RUQ5 167 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 TREHO43280 583 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 SLC37A4O43826 429 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 IQCF3P0C7M6 154 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 GCFC2P16383 781 aaKnown RBP14.7□□□□□ -0.06
VPS28-216ENST00000533806 ATP4AP20648 1035 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 FXR1P51114 621 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS28-216ENST00000533806 STAT5BP51692 787 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 CCL23P55773 120 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 KRT76Q01546 638 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 LETM2Q2VYF4 491 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 MARCH8Q5T0T0 291 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 RASIP1Q5U651 963 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 CCDC60Q8IWA6 550 aaPredicted RBP14.7□□□□□ -0.06
VPS28-216ENST00000533806 SMAP1Q8IYB5 467 aaPredicted RBP14.7□□□□□ -0.06
VPS28-216ENST00000533806 CAGE1Q8TC20 777 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 LMBR1Q8WVP7 490 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 GJA10Q969M2 543 aa14.7□□□□□ -0.06
VPS28-216ENST00000533806 DDX25Q9UHL0 483 aaKnown RBP14.7□□□□□ -0.06
VPS28-216ENST00000533806 MAFBQ9Y5Q3 323 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms