RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 Q4G0T1 1027 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 KRT40Q6A162 431 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 PPP1R13LQ8WUF5 828 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 TNFRSF25Q93038 417 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 TMX3Q96JJ7 454 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 ZNF577Q9BSK1 485 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 UBE2OQ9C0C9 1292 aaKnown RBP17.07■□□□□ 0.32
CPSF1-208ENST00000532560 HIPK3Q9H422 1215 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 HDAC6Q9UBN7 1215 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 DHX15O43143 795 aaKnown RBP17.06■□□□□ 0.32
CPSF1-208ENST00000532560 LGR5O75473 907 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 HOXC8P31273 242 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 ACTR2P61160 394 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 INF2Q27J81 1249 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 GDF6Q6KF10 455 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-208ENST00000532560 MFSD5Q6N075 450 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 MBOAT7Q96N66 472 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 PPP1R12CQ9BZL4 782 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 TBC1D22BQ9NU19 505 aa17.06■□□□□ 0.32
CPSF1-208ENST00000532560 CCNE2O96020 404 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 CYP2C9P11712 490 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 FOSBP53539 338 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 FPGSQ05932 587 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 NR5A1Q13285 461 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 PTGISQ16647 500 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 HABP4Q5JVS0 413 aaKnown RBP17.05■□□□□ 0.32
CPSF1-208ENST00000532560 UTP14CQ5TAP6 766 aaKnown RBP17.05■□□□□ 0.32
CPSF1-208ENST00000532560 PIK3AP1Q6ZUJ8 805 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 NEK8Q86SG6 692 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 DIS3L2Q8IYB7 885 aaKnown RBP17.05■□□□□ 0.32
CPSF1-208ENST00000532560 C8orf76Q96K31 380 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 CTAGE1Q96RT6 745 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 ERAP1Q9NZ08 941 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 NOD1Q9Y239 953 aa17.05■□□□□ 0.32
CPSF1-208ENST00000532560 UMODL1Q5DID0 1318 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 TANC1Q9C0D5 1861 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 PITPNM1O00562 1244 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 MSH4O15457 936 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 ATG7O95352 703 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 TDP2O95551 362 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 SMIM10L2AP0DMW4 78 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 SMIM10L2BP0DMW5 78 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 GCFC2P16383 781 aaKnown RBP17.04■□□□□ 0.32
CPSF1-208ENST00000532560 KRT76Q01546 638 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 PPP4R3AQ6IN85 833 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 ZNF746Q6NUN9 644 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-208ENST00000532560 TDHQ8IZJ6 230 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 FAM184AQ8NB25 1140 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 SLC5A5Q92911 643 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 PCYT2Q99447 389 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 RIT2Q99578 217 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 NAP1L4Q99733 375 aaKnown RBP17.04■□□□□ 0.32
CPSF1-208ENST00000532560 SMARCAD1Q9H4L7 1026 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 TCEAL9Q9UHQ7 104 aa17.04■□□□□ 0.32
CPSF1-208ENST00000532560 C17orf102A2RUQ5 167 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 BTBD18B2RXH4 712 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 DDX39AO00148 427 aaKnown RBP17.03■□□□□ 0.32
CPSF1-208ENST00000532560 CYP2C18P33260 490 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 RBL2Q08999 1139 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 PPIGQ13427 754 aaKnown RBP eCLIP17.03■□□□□ 0.325e-17■■■□□ 14.8
CPSF1-208ENST00000532560 BFSP2Q13515 415 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 SAFBQ15424 915 aaKnown RBP eCLIP17.03■□□□□ 0.32
CPSF1-208ENST00000532560 LETM2Q2VYF4 491 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 EARS2Q5JPH6 523 aaKnown RBP17.03■□□□□ 0.32
CPSF1-208ENST00000532560 SMAP1Q8IYB5 467 aaPredicted RBP17.03■□□□□ 0.32
CPSF1-208ENST00000532560 TMEM199Q8N511 208 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 CCDC155Q8N6L0 562 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 FBXO18Q8NFZ0 1043 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 ETNPPLQ8TBG4 499 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 CAGE1Q8TC20 777 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 GLG1Q92896 1179 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 WNT8AQ9H1J5 351 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 AZI2Q9H6S1 392 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 DDX25Q9UHL0 483 aaKnown RBP17.03■□□□□ 0.32
CPSF1-208ENST00000532560 KIF3AQ9Y496 699 aa17.03■□□□□ 0.32
CPSF1-208ENST00000532560 TRIOBPQ9H2D6 2365 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 IGKV6D-21A0A0A0MT36 114 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 FAM205CA6NFA0 338 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 PTK7Q13308 1070 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 HIC1Q14526 733 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 MIS18BP1Q6P0N0 1132 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 ABHD15Q6UXT9 468 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 PLPPR4Q7Z2D5 763 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 AFAP1L1Q8TED9 768 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 DHX38Q92620 1227 aaKnown RBP17.02■□□□□ 0.32
CPSF1-208ENST00000532560 UIMC1Q96RL1 719 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 RNPEPQ9H4A4 650 aa17.02■□□□□ 0.32
CPSF1-208ENST00000532560 NRCAMQ92823 1304 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 SLC37A4O43826 429 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 CCNT1O60563 726 aaKnown RBP17.01■□□□□ 0.31
CPSF1-208ENST00000532560 GAS7O60861 476 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 PSMD10O75832 226 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 GNAT1P11488 350 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 CSF2RAP15509 400 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 MARK3P27448 753 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 SLC26A2P50443 739 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 EPHB4P54760 987 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 ZNF200P98182 395 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-208ENST00000532560 GUCY1B3Q02153 619 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 LRCH2Q5VUJ6 765 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms