RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ZBTB43O43298 467 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 HOXC8P31273 242 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 NAPAP54920 295 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 TFF2Q03403 129 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 PPFIA1Q13136 1202 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 KRT32Q14532 448 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 RTN1Q16799 776 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 DHX32Q7L7V1 743 aaKnown RBP16.88■□□□□ 0.29
VPS28-215ENST00000531924 LMBR1Q8WVP7 490 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 HLA-CQ95604 372 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 ERAP1Q9NZ08 941 aa16.88■□□□□ 0.29
VPS28-215ENST00000531924 LINC01553A4QN01 128 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 ATP9AO75110 1047 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 CDC45O75419 566 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 UPP2O95045 317 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 KCNA2P16389 499 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 ITGB5P18084 799 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 MARK3P27448 753 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 ERVK-21P61565 698 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 TAF2Q6P1X5 1199 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 APOA5Q6Q788 366 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 GDPD5Q8WTR4 605 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 APBB2Q92870 758 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 TNPO1Q92973 898 aaKnown RBP16.87■□□□□ 0.29
VPS28-215ENST00000531924 YME1L1Q96TA2 773 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 SDF4Q9BRK5 362 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 SMARCAD1Q9H4L7 1026 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 JADE2Q9NQC1 790 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 LMCD1Q9NZU5 365 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 UBIAD1Q9Y5Z9 338 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 TET1Q8NFU7 2136 aa16.87■□□□□ 0.29
VPS28-215ENST00000531924 TRANK1O15050 2925 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 GOLGA8AA7E2F4 631 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 GOLGA8BA8MQT2 603 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 HMGB1P09429 215 aaKnown RBP16.86■□□□□ 0.29
VPS28-215ENST00000531924 ADCY7P51828 1080 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 COL9A3Q14050 684 aaPredicted RBP16.86■□□□□ 0.29
VPS28-215ENST00000531924 SPRED2Q7Z698 418 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 TCEANC2Q96MN5 208 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 IFIH1Q9BYX4 1025 aaKnown RBP16.86■□□□□ 0.29
VPS28-215ENST00000531924 AZI2Q9H6S1 392 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 SUGCTQ9HAC7 445 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 TELO2Q9Y4R8 837 aa16.86■□□□□ 0.29
VPS28-215ENST00000531924 V9GY48 417 aaPredicted RBP16.86■□□□□ 0.29
VPS28-215ENST00000531924 FOSP01100 380 aaPredicted RBP16.85■□□□□ 0.29
VPS28-215ENST00000531924 ZNF76P36508 570 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 IGBP1P78318 339 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 GRIK4Q16099 956 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 WWC2Q6AWC2 1192 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 PPP1R18Q6NYC8 613 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 TEX2Q8IWB9 1127 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 FBXO22Q8NEZ5 403 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 GLT8D2Q9H1C3 349 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 JPH1Q9HDC5 661 aaPredicted RBP16.85■□□□□ 0.29
VPS28-215ENST00000531924 TUBE1Q9UJT0 475 aa16.85■□□□□ 0.29
VPS28-215ENST00000531924 KLF18A0A0U1RQI7 1052 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 GSTTP1A0A1W2PQM5 241 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 LPXNO60711 386 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 BMP1P13497 986 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 KCNQ1P51787 676 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 EXOSC10Q01780 885 aaKnown RBP16.84■□□□□ 0.29
VPS28-215ENST00000531924 FAM26DQ5JW98 314 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 SKAP1Q86WV1 359 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 SAMD11Q96NU1 681 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 MXRA8Q9BRK3 442 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 RIC8AQ9NPQ8 531 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 SLC9A2Q9UBY0 812 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 TRPC6Q9Y210 931 aa16.84■□□□□ 0.29
VPS28-215ENST00000531924 SPTBN5Q9NRC6 3674 aaKnown RBP16.83■□□□□ 0.29
VPS28-215ENST00000531924 CCDC196A0A1B0GTZ2 297 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 SMCO2A6NFE2 343 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 RRN3P2A6NIE6 340 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 hCG_1984214I3L0E3 225 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 RPLP2P05387 115 aaKnown RBP16.83■□□□□ 0.28
VPS28-215ENST00000531924 GHRP10912 638 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 ADAM17P78536 824 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 HTRA4P83105 476 aaPredicted RBP16.83■□□□□ 0.28
VPS28-215ENST00000531924 PTPROQ16827 1216 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 RUFY4Q6ZNE9 571 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 ZNF713Q8N859 430 aaPredicted RBP16.83■□□□□ 0.28
VPS28-215ENST00000531924 CNTNAP5Q8WYK1 1306 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 TOP1MTQ969P6 601 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 C17orf80Q9BSJ5 609 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 KCNH7Q9NS40 1196 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 BRPF3Q9ULD4 1205 aa16.83■□□□□ 0.28
VPS28-215ENST00000531924 M0QZ92 97 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 TSGA10IPQ3SY00 556 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 CEP55Q53EZ4 464 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 RPAINQ86UA6 219 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 RASEFQ8IZ41 740 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 DNAJB3Q8WWF6 145 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 PGBD1Q96JS3 809 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 NECAB3Q96P71 396 aaPredicted RBP16.82■□□□□ 0.28
VPS28-215ENST00000531924 ANO3Q9BYT9 981 aa16.82■□□□□ 0.28
VPS28-215ENST00000531924 FAM49AQ9H0Q0 323 aaPredicted RBP16.82■□□□□ 0.28
VPS28-215ENST00000531924 PRRC2BQ5JSZ5 2229 aaKnown RBP16.82■□□□□ 0.28
VPS28-215ENST00000531924 RBAK-RBAKDNI3L0D1 243 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 STXBP3O00186 592 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 CHRNA1P02708 482 aa16.81■□□□□ 0.28
VPS28-215ENST00000531924 METAP2P50579 478 aaKnown RBP eCLIP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms