RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 USP17L19D6RCP7 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L20D6RJB6 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 CYP11B2P19099 503 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 KLRC1P26715 233 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 MAGEA9P43362 315 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L24Q0WX57 530 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 HERC4Q5GLZ8 1057 aaPredicted RBP21.21■□□□□ 0.99
VPS28-213ENST00000530983 USP17L6PQ6QN14 398 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 ZC3H3Q8IXZ2 948 aaKnown RBP21.21■□□□□ 0.99
VPS28-213ENST00000530983 CERS5Q8N5B7 392 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 CAVIN3Q969G5 261 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 KCNMB3Q9NPA1 279 aa21.21■□□□□ 0.99
VPS28-213ENST00000530983 GLE1Q53GS7 698 aaKnown RBP21.2■□□□□ 0.98
VPS28-213ENST00000530983 EMILIN3Q9NT22 766 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 RNF14Q9UBS8 474 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 A0A087X0T9 212 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 FTCDO95954 541 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 FAM228BP0C875 321 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 HOXA10P31260 410 aaPredicted RBP21.2■□□□□ 0.98
VPS28-213ENST00000530983 RAPGEF1Q13905 1077 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 GANQ9H2C0 597 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 PCDHGC5Q9Y5F6 944 aa21.2■□□□□ 0.98
VPS28-213ENST00000530983 FRMD3A2A2Y4 597 aa21.19■□□□□ 0.98
VPS28-213ENST00000530983 SLURP2P0DP57 97 aa21.19■□□□□ 0.98
VPS28-213ENST00000530983 ARID5AQ03989 594 aa21.19■□□□□ 0.98
VPS28-213ENST00000530983 ARSHQ5FYA8 562 aa21.19■□□□□ 0.98
VPS28-213ENST00000530983 PACS2Q86VP3 889 aa21.19■□□□□ 0.98
VPS28-213ENST00000530983 NAP1L4Q99733 375 aaKnown RBP21.19■□□□□ 0.98
VPS28-213ENST00000530983 LUC7LQ9NQ29 371 aaKnown RBP21.19■□□□□ 0.98
VPS28-213ENST00000530983 AIPL1Q9NZN9 384 aa21.19■□□□□ 0.98
VPS28-213ENST00000530983 RIMBP2O15034 1052 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 MED24O75448 989 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 GLI1P08151 1106 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 ADAM9Q13443 819 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 FAM133AQ8N9E0 248 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 PACSIN1Q9BY11 444 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 USP40Q9NVE5 1235 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 ADAMTS1Q9UHI8 967 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 KIF13BQ9NQT8 1826 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 GOLGA8KD6RF30 607 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 MPHOSPH10O00566 681 aaKnown RBP21.18■□□□□ 0.98
VPS28-213ENST00000530983 STAT3P40763 770 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 SLC12A3P55017 1021 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 MEI1Q5TIA1 1274 aa21.18■□□□□ 0.98
VPS28-213ENST00000530983 DNA2P51530 1060 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 CASP5P51878 434 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 KLHL30Q0D2K2 578 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 KIAA0753Q2KHM9 967 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 QRICH1Q2TAL8 776 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 EDRF1Q3B7T1 1238 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.17■□□□□ 0.98
VPS28-213ENST00000530983 GDF3Q9NR23 364 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 SUGT1Q9Y2Z0 365 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 POTEFA5A3E0 1075 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 ANKRD65E5RJM6 399 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 POTEIP0CG38 1075 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 EPB41P11171 864 aaKnown RBP21.17■□□□□ 0.98
VPS28-213ENST00000530983 IRAK1P51617 712 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 USP11P51784 963 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 KCNH2Q12809 1159 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 ALS2CLQ60I27 953 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 POTEGQ6S5H5 508 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 POTEEQ6S8J3 1075 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 CRAMP1Q96RY5 1269 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 MXD3Q9BW11 206 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 ANO3Q9BYT9 981 aa21.17■□□□□ 0.98
VPS28-213ENST00000530983 PACSIN2Q9UNF0 486 aaPredicted RBP21.17■□□□□ 0.98
VPS28-213ENST00000530983 CYP3A7-CYP3A51PA0A087WV96 503 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 ZSCAN5CA6NGD5 496 aaPredicted RBP21.16■□□□□ 0.98
VPS28-213ENST00000530983 OPA1O60313 960 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 CYP3A7P24462 503 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 PPFIA1Q13136 1202 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 ENOX2Q16206 610 aaKnown RBP21.16■□□□□ 0.98
VPS28-213ENST00000530983 TTC31Q49AM3 519 aaPredicted RBP21.16■□□□□ 0.98
VPS28-213ENST00000530983 TTMPQ5BVD1 217 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 DPY19L2P1Q6NXN4 242 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 PPP4R3CPQ6ZMV5 832 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 MBOAT7Q96N66 472 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 INPP4AQ96PE3 977 aaPredicted RBP21.16■□□□□ 0.98
VPS28-213ENST00000530983 COA1Q9GZY4 146 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 DHX36Q9H2U1 1008 aaKnown RBP21.16■□□□□ 0.98
VPS28-213ENST00000530983 PITPNM2Q9BZ72 1349 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 NR2F2P24468 414 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 CARSP49589 748 aaKnown RBP21.16■□□□□ 0.98
VPS28-213ENST00000530983 SCNN1DP51172 638 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 CORO7P57737 925 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 NNTQ13423 1086 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 ASIC2Q16515 512 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 ICE2Q659A1 982 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 IFT20Q8IY31 132 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 ARL8AQ96BM9 186 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 PCDHA1Q9Y5I3 950 aa21.16■□□□□ 0.98
VPS28-213ENST00000530983 ESYT3A0FGR9 886 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 GRID2IPA4D2P6 1211 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 CETN3O15182 167 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 SLC26A4O43511 780 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 HEXIM1O94992 359 aaKnown RBP21.15■□□□□ 0.98
VPS28-213ENST00000530983 EPS15P42566 896 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 SPIRE1Q08AE8 756 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 CDC42EP5Q6NZY7 148 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms