RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 RMND1Q9NWS8 449 aa23.75■■□□□ 1.39
VPS28-212ENST00000530836 POTEB2H3BUK9 544 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 MAFGO15525 162 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 ELNP15502 786 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 EIF2AK2P19525 551 aaKnown RBP23.74■■□□□ 1.39
VPS28-212ENST00000530836 PPP2R5CQ13362 524 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 CCL14Q16627 93 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 TMEM119Q4V9L6 283 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 LRCH2Q5VUJ6 765 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 GRAMD1CQ8IYS0 662 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 FAM133AQ8N9E0 248 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 MLKLQ8NB16 471 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 MAN1B1Q9UKM7 699 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 PLXNB2O15031 1838 aa23.74■■□□□ 1.39
VPS28-212ENST00000530836 PSMD10O75832 226 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 ITGB5P18084 799 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 CCT6AP40227 531 aaKnown RBP23.73■■□□□ 1.39
VPS28-212ENST00000530836 CNTN2Q02246 1040 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 MORC3Q14149 939 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 DPCR1Q3MIW9 517 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 SLC9C1Q4G0N8 1177 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 C11orf57Q6ZUT1 292 aaPredicted RBP23.73■■□□□ 1.39
VPS28-212ENST00000530836 TRIB2Q92519 343 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 MAML3Q96JK9 1138 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 IWS1Q96ST2 819 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 GTPBP4Q9BZE4 634 aaKnown RBP23.73■■□□□ 1.39
VPS28-212ENST00000530836 FLRT1Q9NZU1 646 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 VAV3Q9UKW4 847 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 GOLGA6L19H0YKK7 550 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 IPO5O00410 1097 aaKnown RBP23.73■■□□□ 1.39
VPS28-212ENST00000530836 GAS7O60861 476 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 IGHA2P01877 340 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 OLFML2BQ68BL8 750 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 SV2BQ7L1I2 683 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 VSIG10LQ86VR7 867 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 GJA10Q969M2 543 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 PNMA5Q96PV4 448 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 MTRQ99707 1265 aa23.73■■□□□ 1.39
VPS28-212ENST00000530836 BECN2A8MW95 431 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 NR3C2P08235 984 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 MUTP22033 750 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 RPA1P27694 616 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 MRPS9P82933 396 aaKnown RBP23.72■■□□□ 1.39
VPS28-212ENST00000530836 MTMR1Q13613 665 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 ZNF467Q7Z7K2 595 aaPredicted RBP23.72■■□□□ 1.39
VPS28-212ENST00000530836 SH3TC2Q8TF17 1288 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 LARP4BQ92615 738 aaKnown RBP23.72■■□□□ 1.39
VPS28-212ENST00000530836 FGD4Q96M96 766 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 POLR3CQ9BUI4 534 aaPredicted RBP23.72■■□□□ 1.39
VPS28-212ENST00000530836 TEKT3Q9BXF9 490 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 KCNH7Q9NS40 1196 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 ZNF236Q9UL36 1845 aa23.72■■□□□ 1.39
VPS28-212ENST00000530836 SMTNL1A8MU46 457 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 HMGCRP04035 888 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 IQCB1Q15051 598 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 NCAPH2Q6IBW4 605 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 NLRX1Q86UT6 975 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 IL31RAQ8NI17 732 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 RAD54LQ92698 747 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 CCDC47Q96A33 483 aaKnown RBP23.71■■□□□ 1.39
VPS28-212ENST00000530836 GPRASP2Q96D09 838 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 CDHR1Q96JP9 859 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 PLIN2Q99541 437 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 C7orf25Q9BPX7 421 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 TBC1D22BQ9NU19 505 aa23.71■■□□□ 1.39
VPS28-212ENST00000530836 SOWAHBA6NEL2 793 aa23.7■■□□□ 1.39
VPS28-212ENST00000530836 B4DLN1 442 aa23.7■■□□□ 1.39
VPS28-212ENST00000530836 ARP10275 920 aa23.7■■□□□ 1.39
VPS28-212ENST00000530836 MYCLP12524 364 aaPredicted RBP23.7■■□□□ 1.39
VPS28-212ENST00000530836 KCNB1Q14721 858 aa23.7■■□□□ 1.39
VPS28-212ENST00000530836 LUZP1Q86V48 1076 aa23.7■■□□□ 1.39
VPS28-212ENST00000530836 ARMC5Q96C12 935 aa23.7■■□□□ 1.39
VPS28-212ENST00000530836 PURBQ96QR8 312 aaKnown RBP23.7■■□□□ 1.39
VPS28-212ENST00000530836 ADD3Q9UEY8 706 aaKnown RBP23.7■■□□□ 1.39
VPS28-212ENST00000530836 RPN1P04843 607 aaKnown RBP23.7■■□□□ 1.38
VPS28-212ENST00000530836 CUL4BQ13620 913 aa23.7■■□□□ 1.38
VPS28-212ENST00000530836 MAMDC4Q6UXC1 1216 aa23.7■■□□□ 1.38
VPS28-212ENST00000530836 MSL3Q8N5Y2 521 aaKnown RBP23.7■■□□□ 1.38
VPS28-212ENST00000530836 AGO4Q9HCK5 861 aaKnown RBP23.7■■□□□ 1.38
VPS28-212ENST00000530836 TUFT1Q9NNX1 390 aa23.7■■□□□ 1.38
VPS28-212ENST00000530836 BLOC1S4Q9NUP1 217 aa23.7■■□□□ 1.38
VPS28-212ENST00000530836 IKBKBO14920 756 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 INHAP05111 366 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 TPM4P67936 248 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 MFSD14CQ5VZR4 134 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 CNNM4Q6P4Q7 775 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 NEK9Q8TD19 979 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 STAMQ92783 540 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 INPP4AQ96PE3 977 aaPredicted RBP23.69■■□□□ 1.38
VPS28-212ENST00000530836 MPHOSPH6Q99547 160 aaKnown RBP23.69■■□□□ 1.38
VPS28-212ENST00000530836 TINF2Q9BSI4 451 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 TRIM9Q9C026 710 aa23.69■■□□□ 1.38
VPS28-212ENST00000530836 CCDC173Q0VFZ6 552 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 TRIM32Q13049 653 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 ISM2Q6H9L7 571 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 B3GNT9Q6UX72 402 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 CATSPER3Q86XQ3 398 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 TNS4Q8IZW8 715 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 BLZF1Q9H2G9 400 aa23.68■■□□□ 1.38
VPS28-212ENST00000530836 KIAA1024Q9UPX6 916 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms