RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 DOCK5Q9H7D0 1870 aa15.2■□□□□ 0.02
VPS28-211ENST00000530790 EMSYQ7Z589 1322 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 NBNO60934 754 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 CXCL10P02778 98 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 IFNAR1P17181 557 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 PDIA3P30101 505 aaKnown RBP15.19■□□□□ 0.02
VPS28-211ENST00000530790 ZNF76P36508 570 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 RABGGTBP53611 331 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 ARHGAP4P98171 946 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 TOB2Q14106 344 aaPredicted RBP15.19■□□□□ 0.02
VPS28-211ENST00000530790 PKN1Q16512 942 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 JAKMIP3Q5VZ66 844 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 PPP2R2DQ66LE6 453 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 MCTP2Q6DN12 878 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 CNKSR3Q6P9H4 555 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 REXO1Q8N1G1 1221 aaKnown RBP15.19■□□□□ 0.02
VPS28-211ENST00000530790 MAFAQ8NHW3 353 aaPredicted RBP15.19■□□□□ 0.02
VPS28-211ENST00000530790 PHOSPHO2Q8TCD6 241 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 GLG1Q92896 1179 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 RNPEPQ9H4A4 650 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 NCOA5Q9HCD5 579 aaKnown RBP15.19■□□□□ 0.02
VPS28-211ENST00000530790 SLC9A2Q9UBY0 812 aa15.19■□□□□ 0.02
VPS28-211ENST00000530790 NRCAMQ92823 1304 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 RSPH10B2B2RC85 870 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 TREHO43280 583 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 PPFIA3O75145 1194 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 CAND2O75155 1236 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 RSPH10BP0C881 870 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 MARK3P27448 753 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 GNA11P29992 359 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 CCT2P78371 535 aaKnown RBP15.18■□□□□ 0.02
VPS28-211ENST00000530790 NTRK3Q16288 839 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 TRAF7Q6Q0C0 670 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 TRIM22Q8IYM9 498 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 CYP2W1Q8TAV3 490 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 BICD2Q8TD16 824 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 LMBR1Q8WVP7 490 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 GAS2L1Q99501 681 aaPredicted RBP15.18■□□□□ 0.02
VPS28-211ENST00000530790 SETD4Q9NVD3 440 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 ERAP1Q9NZ08 941 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 CHD9Q3L8U1 2897 aa15.18■□□□□ 0.02
VPS28-211ENST00000530790 NFASCO94856 1347 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 GSTTP1A0A1W2PQM5 241 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 CPLX1O14810 134 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 EFCAB14O75071 495 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 MYOGP15173 224 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 WDR5P61964 334 aaKnown RBP15.17■□□□□ 0.02
VPS28-211ENST00000530790 PPFIA1Q13136 1202 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 GPNMBQ14956 572 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 NIPA1Q7RTP0 329 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 HERC6Q8IVU3 1022 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 SMARCAD1Q9H4L7 1026 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 PRDM12Q9H4Q4 367 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 AZI2Q9H6S1 392 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 AGO4Q9HCK5 861 aaKnown RBP15.17■□□□□ 0.02
VPS28-211ENST00000530790 PDRG1Q9NUG6 133 aa15.17■□□□□ 0.02
VPS28-211ENST00000530790 GBF1Q92538 1859 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 EYSQ5T1H1 3165 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 ABHD14A-ACY1A0A1B0GW23 586 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 KIF28PB7ZC32 967 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 MEIS1O00470 390 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 LGR5O75473 907 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 CA3P07451 260 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 CTSHP09668 335 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 ARP10275 920 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 ACTR2P61160 394 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 SETQ01105 290 aaPredicted RBP15.16■□□□□ 0.02
VPS28-211ENST00000530790 ITGB3BPQ13352 177 aaPredicted RBP15.16■□□□□ 0.02
VPS28-211ENST00000530790 MBTPS1Q14703 1052 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 CPLX2Q6PUV4 134 aaKnown RBP15.16■□□□□ 0.02
VPS28-211ENST00000530790 ZNF274Q96GC6 653 aaPredicted RBP15.16■□□□□ 0.02
VPS28-211ENST00000530790 VPS54Q9P1Q0 977 aa15.16■□□□□ 0.02
VPS28-211ENST00000530790 FAM86B1E9PN63 330 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 FAM86B2P0C5J1 330 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 SSRP1Q08945 709 aaKnown RBP15.15■□□□□ 0.02
VPS28-211ENST00000530790 STK3Q13188 491 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 IKBKEQ14164 716 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 GRIK4Q16099 956 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 TAF2Q6P1X5 1199 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 PLA2G4DQ86XP0 818 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS28-211ENST00000530790 SH3GLB2Q9NR46 395 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 TUBE1Q9UJT0 475 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 TRPC6Q9Y210 931 aa15.15■□□□□ 0.02
VPS28-211ENST00000530790 TRIP12Q14669 1992 aaPredicted RBP15.15■□□□□ 0.02
VPS28-211ENST00000530790 DDX39AO00148 427 aaKnown RBP15.14■□□□□ 0.01
VPS28-211ENST00000530790 TLL1O43897 1013 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 EIF5BO60841 1220 aaKnown RBP15.14■□□□□ 0.01
VPS28-211ENST00000530790 DEXIO95424 95 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 CYP3A4P08684 503 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 ANAPC15P60006 121 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 ADAM17P78536 824 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 DEFB103AP81534 67 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 TCTN1Q2MV58 587 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 RSPH3Q86UC2 560 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 RASGRP4Q8TDF6 673 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 CRYGNQ8WXF5 182 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 TNPO1Q92973 898 aaKnown RBP15.14■□□□□ 0.01
VPS28-211ENST00000530790 PCYT2Q99447 389 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 LARP6Q9BRS8 491 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms