RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MAGEC2Q9UBF1 373 aaPredicted RBP23.03■■□□□ 1.28
VPS28-209ENST00000528142 IQCA1LA6NCM1 817 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 SPDYE16A6NNV3 312 aaPredicted RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 DHX15O43143 795 aaKnown RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 EIF2AK2P19525 551 aaKnown RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 CACNB1Q02641 598 aaPredicted RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 BAATQ14032 418 aaPredicted RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 E4F1Q66K89 784 aaPredicted RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 NSMFQ6X4W1 530 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 CREBRFQ8IUR6 639 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 MYOCDQ8IZQ8 938 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 CCAR2Q8N163 923 aaKnown RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 PDCD2LQ9BRP1 358 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 FGFBP2Q9BYJ0 223 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 BHMT2Q9H2M3 363 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 AGO4Q9HCK5 861 aaKnown RBP23.02■■□□□ 1.28
VPS28-209ENST00000528142 PXMP2Q9NR77 195 aa23.02■■□□□ 1.28
VPS28-209ENST00000528142 USP27XA6NNY8 438 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 LGALS16A8MUM7 142 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 ADKP55263 362 aaKnown RBP23.01■■□□□ 1.27
VPS28-209ENST00000528142 LRRC63Q05C16 580 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 HERC4Q5GLZ8 1057 aaPredicted RBP23.01■■□□□ 1.27
VPS28-209ENST00000528142 FAM114A1Q8IWE2 563 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 TPH2Q8IWU9 490 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 ZNF507Q8TCN5 953 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 RMDN3Q96TC7 470 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 KRT18P05783 430 aaKnown RBP23.01■■□□□ 1.27
VPS28-209ENST00000528142 RBL2Q08999 1139 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 RAD51AP2Q09MP3 1159 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 DNTTIP2Q5QJE6 756 aaKnown RBP23.01■■□□□ 1.27
VPS28-209ENST00000528142 CEP135Q66GS9 1140 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 CNKSR2Q8WXI2 1034 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 PURBQ96QR8 312 aaKnown RBP23.01■■□□□ 1.27
VPS28-209ENST00000528142 TEX13BQ9BXU2 312 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 CSADQ9Y600 493 aa23.01■■□□□ 1.27
VPS28-209ENST00000528142 OTOFQ9HC10 1997 aa23■■□□□ 1.27
VPS28-209ENST00000528142 AKR1B15C9JRZ8 316 aaPredicted RBP23■■□□□ 1.27
VPS28-209ENST00000528142 IREB2P48200 963 aaKnown RBP23■■□□□ 1.27
VPS28-209ENST00000528142 ITGB3BPQ13352 177 aaPredicted RBP23■■□□□ 1.27
VPS28-209ENST00000528142 ZCWPW2Q504Y3 356 aa23■■□□□ 1.27
VPS28-209ENST00000528142 CDCA5Q96FF9 252 aa23■■□□□ 1.27
VPS28-209ENST00000528142 EEF2KMTQ96G04 330 aa23■■□□□ 1.27
VPS28-209ENST00000528142 CNOT6LQ96LI5 555 aaKnown RBP23■■□□□ 1.27
VPS28-209ENST00000528142 REEP2Q9BRK0 252 aa23■■□□□ 1.27
VPS28-209ENST00000528142 RUSC1Q9BVN2 902 aa23■■□□□ 1.27
VPS28-209ENST00000528142 RRAGCQ9HB90 399 aa23■■□□□ 1.27
VPS28-209ENST00000528142 WRAP73Q9P2S5 460 aaPredicted RBP23■■□□□ 1.27
VPS28-209ENST00000528142 MTMR1Q13613 665 aa22.99■■□□□ 1.27
VPS28-209ENST00000528142 PPFIBP1Q86W92 1011 aa22.99■■□□□ 1.27
VPS28-209ENST00000528142 MB21D1Q8N884 522 aa22.99■■□□□ 1.27
VPS28-209ENST00000528142 TUBGCP2Q9BSJ2 902 aa22.99■■□□□ 1.27
VPS28-209ENST00000528142 TBC1D7Q9P0N9 293 aa22.99■■□□□ 1.27
VPS28-209ENST00000528142 UBXN1Q04323 297 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 ARHGEF16Q5VV41 709 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 RINT1Q6NUQ1 792 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 XRRA1Q6P2D8 792 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 LRRC55Q6ZSA7 311 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 MOB2Q70IA6 237 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 PIGOQ8TEQ8 1089 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 PANX2Q96RD6 677 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 BAG1Q99933 345 aaPredicted RBP22.98■■□□□ 1.27
VPS28-209ENST00000528142 MAF1Q9H063 256 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 R3HCC1Q9Y3T6 440 aaKnown RBP22.98■■□□□ 1.27
VPS28-209ENST00000528142 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.98■■□□□ 1.278e-7■■□□□ 13.6
VPS28-209ENST00000528142 RBBP6Q7Z6E9 1792 aaKnown RBP22.98■■□□□ 1.27
VPS28-209ENST00000528142 A0A1W2PQC6 194 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 GYPCP04921 128 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 TREML2Q5T2D2 321 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 NEK9Q8TD19 979 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 SCFD1Q8WVM8 642 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 NACC1Q96RE7 527 aa22.98■■□□□ 1.27
VPS28-209ENST00000528142 STX10O60499 249 aa22.97■■□□□ 1.27
VPS28-209ENST00000528142 MYCLP12524 364 aaPredicted RBP22.97■■□□□ 1.27
VPS28-209ENST00000528142 C1orf186Q6ZWK4 172 aa22.97■■□□□ 1.27
VPS28-209ENST00000528142 PNMA8AQ86V59 439 aaPredicted RBP22.97■■□□□ 1.27
VPS28-209ENST00000528142 VSIG10LQ86VR7 867 aa22.97■■□□□ 1.27
VPS28-209ENST00000528142 PKD2L1Q9P0L9 805 aa22.97■■□□□ 1.27
VPS28-209ENST00000528142 DDX39AO00148 427 aaKnown RBP22.96■■□□□ 1.27
VPS28-209ENST00000528142 ZBTB39O15060 712 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 ARHGAP6O43182 974 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 MFAP3LO75121 409 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 FGFR1OPO95684 399 aaKnown RBP22.96■■□□□ 1.27
VPS28-209ENST00000528142 PPATQ06203 517 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 MIIPQ5JXC2 388 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 MAP1SQ66K74 1059 aaPredicted RBP22.96■■□□□ 1.27
VPS28-209ENST00000528142 NYAP1Q6ZVC0 841 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 TSG101Q99816 390 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 ACAD9Q9H845 621 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 TBC1D22BQ9NU19 505 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 TRMT1Q9NXH9 659 aaKnown RBP22.96■■□□□ 1.27
VPS28-209ENST00000528142 NKRFO15226 690 aaKnown RBP eCLIP22.96■■□□□ 1.27
VPS28-209ENST00000528142 CASP14P31944 242 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 DNM2P50570 870 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 FXR1P51114 621 aaKnown RBP eCLIP22.96■■□□□ 1.27
VPS28-209ENST00000528142 TERF1P54274 439 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 MIER3Q7Z3K6 550 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 SFR1Q86XK3 245 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 C16orf45Q96MC5 204 aaPredicted RBP22.96■■□□□ 1.27
VPS28-209ENST00000528142 LXNQ9BS40 222 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 KCTD10Q9H3F6 313 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms