RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ARHGEF15O94989 841 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 CYP3A4P08684 503 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 MYOGP15173 224 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 ANAPC15P60006 121 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 ARHGAP4P98171 946 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 STK3Q13188 491 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 MTMR1Q13613 665 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 CEP55Q53EZ4 464 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 DEFB128Q7Z7B8 93 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 NLRX1Q86UT6 975 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 SERINC5Q86VE9 423 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 TEX2Q8IWB9 1127 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 ZBTB10Q96DT7 871 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 PBX4Q9BYU1 374 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 SETD4Q9NVD3 440 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 TRANK1O15050 2925 aa12.19□□□□□ -0.46
CD44-227ENST00000528086 MICAL3Q7RTP6 2002 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.18□□□□□ -0.46
CD44-227ENST00000528086 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.18□□□□□ -0.46
CD44-227ENST00000528086 PFKFB2O60825 505 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 LGR5O75473 907 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 FOSP01100 380 aaPredicted RBP12.18□□□□□ -0.46
CD44-227ENST00000528086 FGBP02675 491 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 CXCL10P02778 98 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 FDPSP14324 419 aaKnown RBP12.18□□□□□ -0.46
CD44-227ENST00000528086 DNAJB2P25686 324 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 TCF7P36402 384 aaPredicted RBP12.18□□□□□ -0.46
CD44-227ENST00000528086 RABGGTBP53611 331 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 AK2P54819 239 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 PTK7Q13308 1070 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 AP3B2Q13367 1082 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 MARCH8Q5T0T0 291 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 ZNF618Q5T7W0 954 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 UTP14CQ5TAP6 766 aaKnown RBP12.18□□□□□ -0.46
CD44-227ENST00000528086 PSRC1Q6PGN9 363 aaPredicted RBP12.18□□□□□ -0.46
CD44-227ENST00000528086 C7orf31Q8N865 590 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 LMBR1Q8WVP7 490 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 KATNAL1Q9BW62 490 aa12.18□□□□□ -0.46
CD44-227ENST00000528086 NFASCO94856 1347 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 EVPLQ92817 2033 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 IGKV6D-21A0A0A0MT36 114 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 ATG7O95352 703 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 SELPP16109 830 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 CIITAP33076 1130 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 ME3Q16798 604 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 RUFY4Q6ZNE9 571 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 LRRC8DQ7L1W4 858 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 SPRED2Q7Z698 418 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 TMCO2Q7Z6W1 182 aaPredicted RBP12.17□□□□□ -0.46
CD44-227ENST00000528086 NECAB1Q8N987 351 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 CAGE1Q8TC20 777 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 AFAP1L1Q8TED9 768 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 SEPT1Q8WYJ6 367 aa12.17□□□□□ -0.46
CD44-227ENST00000528086 CDX2Q99626 313 aaPredicted RBP12.17□□□□□ -0.46
CD44-227ENST00000528086 MYH9P35579 1960 aaKnown RBP12.17□□□□□ -0.46
CD44-227ENST00000528086 NOP56O00567 594 aaKnown RBP12.16□□□□□ -0.46
CD44-227ENST00000528086 MAFGO15525 162 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 ATP4AP20648 1035 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 ACTR2P61160 394 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 BFSP2Q13515 415 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 GRIN2CQ14957 1233 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 EARS2Q5JPH6 523 aaKnown RBP12.16□□□□□ -0.46
CD44-227ENST00000528086 NIPA1Q7RTP0 329 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 REXO1Q8N1G1 1221 aaKnown RBP12.16□□□□□ -0.46
CD44-227ENST00000528086 PIAS4Q8N2W9 510 aaPredicted RBP12.16□□□□□ -0.46
CD44-227ENST00000528086 ATP6V0A1Q93050 837 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 GJA10Q969M2 543 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 CDHR1Q96JP9 859 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 SH3GLB2Q9NR46 395 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 KCNJ14Q9UNX9 436 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 STXBP5LQ9Y2K9 1186 aa12.16□□□□□ -0.46
CD44-227ENST00000528086 EMSYQ7Z589 1322 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 C17orf102A2RUQ5 167 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 MBLAC1A4D2B0 266 aaPredicted RBP12.15□□□□□ -0.46
CD44-227ENST00000528086 ZBTB42B2RXF5 422 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 MARK3P27448 753 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 RFC2P35250 354 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 SSRP1Q08945 709 aaKnown RBP12.15□□□□□ -0.46
CD44-227ENST00000528086 ABHD15Q6UXT9 468 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 PLA2G4DQ86XP0 818 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 RPUSD2Q8IZ73 545 aaKnown RBP12.15□□□□□ -0.46
CD44-227ENST00000528086 OXER1Q8TDS5 423 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 TRAPPC12Q8WVT3 735 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 MYLIPQ8WY64 445 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 GLT8D2Q9H1C3 349 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 C6orf50Q9HD87 102 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 JPH1Q9HDC5 661 aaPredicted RBP12.15□□□□□ -0.46
CD44-227ENST00000528086 SLC9A2Q9UBY0 812 aa12.15□□□□□ -0.46
CD44-227ENST00000528086 FAM205CA6NFA0 338 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 DDX39AO00148 427 aaKnown RBP12.14□□□□□ -0.47
CD44-227ENST00000528086 DEXIO95424 95 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 CHRNA1P02708 482 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 PFKMP08237 780 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 DEFB103AP81534 67 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 MGAT3Q09327 533 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 ADGRE1Q14246 886 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 PLCB4Q15147 1175 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 ZNF697Q5TEC3 545 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 B3GNT9Q6UX72 402 aa12.14□□□□□ -0.47
CD44-227ENST00000528086 CCDC60Q8IWA6 550 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms