RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CTTNQ14247 550 aaKnown RBP23.51■■□□□ 1.35
VPS28-208ENST00000527797 LUZP1Q86V48 1076 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 TPH2Q8IWU9 490 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 CCDC47Q96A33 483 aaKnown RBP23.51■■□□□ 1.35
VPS28-208ENST00000527797 FGD4Q96M96 766 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 BPIFA3Q9BQP9 254 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 DACH1Q9UI36 760 aa23.51■■□□□ 1.35
VPS28-208ENST00000527797 ADGRA2Q96PE1 1338 aa23.5■■□□□ 1.35
VPS28-208ENST00000527797 PLA2G4BP0C869 781 aa23.5■■□□□ 1.35
VPS28-208ENST00000527797 KCNA2P16389 499 aa23.5■■□□□ 1.35
VPS28-208ENST00000527797 KCNB1Q14721 858 aa23.5■■□□□ 1.35
VPS28-208ENST00000527797 SAMM50Q9Y512 469 aa23.5■■□□□ 1.35
VPS28-208ENST00000527797 NFASCO94856 1347 aa23.5■■□□□ 1.35
VPS28-208ENST00000527797 SSBP05455 408 aaKnown RBP eCLIP23.49■■□□□ 1.35
VPS28-208ENST00000527797 ADORA2AP29274 412 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 SFNP31947 248 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 JAK3P52333 1124 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 ASIC1P78348 528 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 IQCB1Q15051 598 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 SEPT14Q6ZU15 432 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 GPR142Q7Z601 462 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 PLEKHH3Q7Z736 793 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 ZFYVE28Q9HCC9 887 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 BMP2KQ9NSY1 1161 aaPredicted RBP23.49■■□□□ 1.35
VPS28-208ENST00000527797 LCTP09848 1927 aa23.49■■□□□ 1.35
VPS28-208ENST00000527797 MYMKA6NI61 221 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 ASB14A6NK59 587 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 BECN2A8MW95 431 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 P4HBP07237 508 aaKnown RBP23.48■■□□□ 1.35
VPS28-208ENST00000527797 TM4SF4P48230 202 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 GRM1Q13255 1194 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 ZNF746Q6NUN9 644 aaPredicted RBP23.48■■□□□ 1.35
VPS28-208ENST00000527797 RDM1Q8NG50 284 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 ANP32BQ92688 251 aaKnown RBP23.48■■□□□ 1.35
VPS28-208ENST00000527797 SENP7Q9BQF6 1050 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 WDR64B1ANS9 1081 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 KLRC4O43908 158 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 PSMC6P62333 389 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 ZNF792Q3KQV3 632 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 KMT5BQ4FZB7 885 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 CNNM4Q6P4Q7 775 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 MORC4Q8TE76 937 aa23.48■■□□□ 1.35
VPS28-208ENST00000527797 PVALEFA0A1B0GWK0 134 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 GOLGA6L19H0YKK7 550 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 TLR2O60603 784 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 EYA4O95677 639 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 CCNE2O96020 404 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 ZNF658Q5TYW1 1059 aaPredicted RBP23.47■■□□□ 1.35
VPS28-208ENST00000527797 CYP4F22Q6NT55 531 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 SYT2Q8N9I0 419 aaPredicted RBP23.47■■□□□ 1.35
VPS28-208ENST00000527797 DDX12PQ92771 950 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 NACC1Q96RE7 527 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 LXNQ9BS40 222 aa23.47■■□□□ 1.35
VPS28-208ENST00000527797 COBLO75128 1261 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 RHOBTB3O94955 611 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 YY1P25490 414 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 SLC12A3P55017 1021 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 CT47A1Q5JQC4 288 aaPredicted RBP23.46■■□□□ 1.35
VPS28-208ENST00000527797 DYMQ7RTS9 669 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 GPBP1Q86WP2 473 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 DHX40Q8IX18 779 aaKnown RBP23.46■■□□□ 1.35
VPS28-208ENST00000527797 SMAP1Q8IYB5 467 aaPredicted RBP23.46■■□□□ 1.35
VPS28-208ENST00000527797 AOPEPQ8N6M6 819 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 BANK1Q8NDB2 785 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 GTPBP4Q9BZE4 634 aaKnown RBP23.46■■□□□ 1.35
VPS28-208ENST00000527797 ZSWIM4Q9H7M6 989 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 JPH1Q9HDC5 661 aaPredicted RBP23.46■■□□□ 1.35
VPS28-208ENST00000527797 EXOC1Q9NV70 894 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 SLC9A2Q9UBY0 812 aa23.46■■□□□ 1.35
VPS28-208ENST00000527797 SMTNL1A8MU46 457 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 TGFB3P10600 412 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 GRB14Q14449 540 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 KCNV1Q6PIU1 500 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 C17orf99Q6UX52 265 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 UNC13DQ70J99 1090 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 EEPD1Q7L9B9 569 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 DPP9Q86TI2 863 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 GIMAP8Q8ND71 665 aaPredicted RBP23.45■■□□□ 1.34
VPS28-208ENST00000527797 PCDHA10Q9Y5I2 948 aa23.45■■□□□ 1.34
VPS28-208ENST00000527797 SLC15A5A6NIM6 579 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 CYP11B2P19099 503 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 QARSP47897 775 aaKnown RBP23.44■■□□□ 1.34
VPS28-208ENST00000527797 SP2Q02086 613 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 ZNF784Q8NCA9 323 aaPredicted RBP23.44■■□□□ 1.34
VPS28-208ENST00000527797 ZIC5Q96T25 663 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 BHMT2Q9H2M3 363 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 DIS3Q9Y2L1 958 aaKnown RBP23.44■■□□□ 1.34
VPS28-208ENST00000527797 NOGQ13253 232 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 NEDD9Q14511 834 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 DEFB115Q30KQ5 88 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 ZNF467Q7Z7K2 595 aaPredicted RBP23.44■■□□□ 1.34
VPS28-208ENST00000527797 PIGOQ8TEQ8 1089 aa23.44■■□□□ 1.34
VPS28-208ENST00000527797 WRAP73Q9P2S5 460 aaPredicted RBP23.44■■□□□ 1.34
VPS28-208ENST00000527797 IKBKBO14920 756 aa23.43■■□□□ 1.34
VPS28-208ENST00000527797 KRT18P05783 430 aaKnown RBP23.43■■□□□ 1.34
VPS28-208ENST00000527797 PSAPP07602 524 aa23.43■■□□□ 1.34
VPS28-208ENST00000527797 IDEP14735 1019 aa23.43■■□□□ 1.34
VPS28-208ENST00000527797 ERCC5P28715 1186 aaPredicted RBP23.43■■□□□ 1.34
VPS28-208ENST00000527797 PSMC5P62195 406 aa23.43■■□□□ 1.34
VPS28-208ENST00000527797 ARMCX2Q7L311 632 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms