RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 LARP6Q9BRS8 491 aaKnown RBP18.53■□□□□ 0.56
LSM1-205ENST00000523511 RNPEPQ9H4A4 650 aa18.53■□□□□ 0.56
LSM1-205ENST00000523511 AGO4Q9HCK5 861 aaKnown RBP18.53■□□□□ 0.56
LSM1-205ENST00000523511 EMSYQ7Z589 1322 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 TRIOBPQ9H2D6 2365 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 PFKFB2O60825 505 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 BAIAP3O94812 1187 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 SLC26A2P50443 739 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 NEK4P51957 841 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 RSPH3Q86UC2 560 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 IL17RAQ96F46 866 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 MTMR10Q9NXD2 777 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 PCDHA4Q9UN74 947 aa18.52■□□□□ 0.56
LSM1-205ENST00000523511 RANBP2P49792 3224 aaKnown RBP18.52■□□□□ 0.55
LSM1-205ENST00000523511 LTBP2Q14767 1821 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 KIAA1217Q5T5P2 1943 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 GSTTP1A0A1W2PQM5 241 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 RRN3P2A6NIE6 340 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 KIF28PB7ZC32 967 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 EFCAB14O75071 495 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 PPFIA3O75145 1194 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 ARP10275 920 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 THPOP40225 353 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 PLPPR4Q7Z2D5 763 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 SERINC5Q86VE9 423 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 CYP2W1Q8TAV3 490 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 PHOSPHO2Q8TCD6 241 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 ZNF577Q9BSK1 485 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 SEMA6BQ9H3T3 888 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 SETD4Q9NVD3 440 aa18.51■□□□□ 0.55
LSM1-205ENST00000523511 RSPH10B2B2RC85 870 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 IPO5O00410 1097 aaKnown RBP18.5■□□□□ 0.55
LSM1-205ENST00000523511 RSPH10BP0C881 870 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 KCNJ6P48051 423 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 STAT5BP51692 787 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 AK2P54819 239 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 ACTR2P61160 394 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 SCRN1Q12765 414 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 FAM160B1Q5W0V3 765 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 MIS18BP1Q6P0N0 1132 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 TAF2Q6P1X5 1199 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 Q7L0L9 218 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 BLIDQ8IZY5 108 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 TIFAQ96CG3 184 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 UPF2Q9HAU5 1272 aaKnown RBP18.5■□□□□ 0.55
LSM1-205ENST00000523511 TPCN1Q9ULQ1 816 aa18.5■□□□□ 0.55
LSM1-205ENST00000523511 TREHO43280 583 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 ATP2A2P16615 1042 aaKnown RBP18.49■□□□□ 0.55
LSM1-205ENST00000523511 DNAJB2P25686 324 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 CIITAP33076 1130 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 ZNF200P98182 395 aaPredicted RBP18.49■□□□□ 0.55
LSM1-205ENST00000523511 PPFIA1Q13136 1202 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 IKBKEQ14164 716 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 CNKSR3Q6P9H4 555 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 IL27Q8NEV9 243 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 SLC9A7Q96T83 725 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 BRMS1Q9HCU9 246 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 STXBP5LQ9Y2K9 1186 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 STK36Q9NRP7 1315 aa18.49■□□□□ 0.55
LSM1-205ENST00000523511 SCN10AQ9Y5Y9 1956 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 ABHD14A-ACY1A0A1B0GW23 586 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 FAM86B1E9PN63 330 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 BACH1O14867 736 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 LGR5O75473 907 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 FAM86B2P0C5J1 330 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 HOXC8P31273 242 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 KRT76Q01546 638 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 PRR16Q569H4 304 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 ZNF618Q5T7W0 954 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 KRT25Q7Z3Z0 450 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 TRIM50Q86XT4 487 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 SMAP1Q8IYB5 467 aaPredicted RBP18.48■□□□□ 0.55
LSM1-205ENST00000523511 CRYGNQ8WXF5 182 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 DHX38Q92620 1227 aaKnown RBP18.48■□□□□ 0.55
LSM1-205ENST00000523511 FAM161BQ96MY7 647 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 CTAGE1Q96RT6 745 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 SLC28A3Q9HAS3 691 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 TRPC6Q9Y210 931 aa18.48■□□□□ 0.55
LSM1-205ENST00000523511 ATG7O95352 703 aa18.47■□□□□ 0.55
LSM1-205ENST00000523511 CXCL10P02778 98 aa18.47■□□□□ 0.55
LSM1-205ENST00000523511 MARK3P27448 753 aa18.47■□□□□ 0.55
LSM1-205ENST00000523511 ITGB3BPQ13352 177 aaPredicted RBP18.47■□□□□ 0.55
LSM1-205ENST00000523511 TRIM29Q14134 588 aa18.47■□□□□ 0.55
LSM1-205ENST00000523511 NONOQ15233 471 aaKnown RBP eCLIP18.47■□□□□ 0.55
LSM1-205ENST00000523511 ZNF746Q6NUN9 644 aaPredicted RBP18.47■□□□□ 0.55
LSM1-205ENST00000523511 DAGLBQ8NCG7 672 aa18.47■□□□□ 0.55
LSM1-205ENST00000523511 TBCKQ8TEA7 893 aa18.47■□□□□ 0.55
LSM1-205ENST00000523511 NAP1L4Q99733 375 aaKnown RBP18.47■□□□□ 0.55
LSM1-205ENST00000523511 CXXC1Q9P0U4 656 aaPredicted RBP18.47■□□□□ 0.55
LSM1-205ENST00000523511 ORC3Q9UBD5 711 aaPredicted RBP18.47■□□□□ 0.55
LSM1-205ENST00000523511 IGLV3-22A0A075B6J6 115 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 CCDC194A0A1B0GVG4 234 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 DDX39AO00148 427 aaKnown RBP18.46■□□□□ 0.55
LSM1-205ENST00000523511 PSAPP07602 524 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 GRIK4Q16099 956 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 TRIM71Q2Q1W2 868 aaKnown RBP18.46■□□□□ 0.55
LSM1-205ENST00000523511 RASGRP4Q8TDF6 673 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 LMBR1Q8WVP7 490 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 PBX4Q9BYU1 374 aa18.46■□□□□ 0.55
LSM1-205ENST00000523511 ZNF576Q9H609 170 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms