RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 TBC1D30Q9Y2I9 924 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 COG6Q9Y2V7 657 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 SH3BP1Q9Y3L3 701 aa0.65□□□□□ -2.31
RNU6-539P-201ENST00000516665 ACIN1Q9UKV3 1341 aaKnown RBP0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 MGST3O14880 152 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 PPP1R15AO75807 674 aaPredicted RBP0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 PLGP00747 810 aaPredicted RBP0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 KNG1P01042 644 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 XRCC5P13010 732 aaKnown RBP0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 PRG2P13727 222 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 YARSP54577 528 aaKnown RBP0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 PDE4BQ07343 736 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 KRTAP24-1Q3LI83 254 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 PLEKHG4Q58EX7 1191 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 SH2D6Q7Z4S9 175 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 SLFN12Q8IYM2 578 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 CAGE1Q8TC20 777 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 EPS8L3Q8TE67 593 aaKnown RBP0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 DPF1Q92782 380 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 ZNF414Q96IQ9 312 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 TMEM209Q96SK2 561 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 DUSP26Q9BV47 211 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 VRTNQ9H8Y1 702 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 CCDC87Q9NVE4 849 aa0.64□□□□□ -2.31
RNU6-539P-201ENST00000516665 A0A087WYN8 130 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 GRID2O43424 1007 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 CPNE3O75131 537 aaKnown RBP0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 AVPR1BP47901 424 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 DCP2Q8IU60 420 aaKnown RBP0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 DCP1BQ8IZD4 617 aaKnown RBP0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 LCORLQ8N3X6 602 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 LILRA3Q8N6C8 439 aaPredicted RBP0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 C3orf58Q8NDZ4 430 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 DNASE2BQ8WZ79 361 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 CCDC74BQ96LY2 380 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 PTCHD1Q96NR3 888 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 KIF2CQ99661 725 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 YIPF4Q9BSR8 244 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 NGRNQ9NPE2 291 aaKnown RBP0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 RTN4Q9NQC3 1192 aaKnown RBP0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 GULP1Q9UBP9 304 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 PUF60Q9UHX1 559 aaKnown RBP0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 XDHP47989 1333 aa0.63□□□□□ -2.31
RNU6-539P-201ENST00000516665 IFITM10A6NMD0 228 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 CLASP2O75122 1294 aaKnown RBP0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 LMNB1P20700 586 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 NANOS2P60321 138 aaKnown RBP0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 RNF4P78317 190 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 MTMR3Q13615 1198 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 SEPT6Q14141 434 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 ERV3-1Q14264 604 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 SMAD2Q15796 467 aaKnown RBP0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 NBPF12Q5TAG4 269 aaPredicted RBP0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 KIAA1614Q5VZ46 1190 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 ALKBH2Q6NS38 261 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 VGLL2Q8N8G2 317 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 SEMA6DQ8NFY4 1073 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 CARD11Q9BXL7 1154 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 GPR87Q9BY21 358 aa0.62□□□□□ -2.31
RNU6-539P-201ENST00000516665 IGKV6D-41A0A0C4DH26 115 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 GRXCR1A8MXD5 290 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 CHURC1-FNTBB4DL54 471 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 TNFRSF10CO14798 259 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 ARHGAP6O43182 974 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 TADA3O75528 432 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 BAG4O95429 457 aaKnown RBP0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 CKMP06732 381 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 PLCG1P19174 1290 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 ITPKBP27987 946 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 CHMP4BP1P59074 171 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 TEPPQ6URK8 271 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 MILR1Q7Z6M3 343 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 ANKRD35Q8N283 1001 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 WFIKKN2Q8TEU8 576 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 PGBD4Q96DM1 585 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 AP5M1Q9H0R1 490 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 AGO3Q9H9G7 860 aaKnown RBP0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 PCDHAC2Q9Y5I4 1007 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 AHNAKQ09666 5890 aaKnown RBP0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 AHNAK2Q8IVF2 5795 aa0.61□□□□□ -2.31
RNU6-539P-201ENST00000516665 KLRG2A4D1S0 409 aaPredicted RBP0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 MANSC4A6NHS7 340 aaPredicted RBP0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 PPFIA4O75335 1185 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 PROP1O75360 226 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 TBC1D8O95759 1140 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 PRR35P0CG20 571 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 CXCR3P49682 368 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 NFYCQ13952 458 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 SLC9A4Q6AI14 798 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 IL27Q8NEV9 243 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 COQ10AQ96MF6 247 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 KLK15Q9H2R5 256 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 NELFAQ9H3P2 528 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 ELOVL5Q9NYP7 299 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 ASH2LQ9UBL3 628 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 KLHL3Q9UH77 587 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 NOVA2Q9UNW9 492 aaKnown RBP0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 BTBD3Q9Y2F9 522 aa0.6□□□□□ -2.31
RNU6-539P-201ENST00000516665 UBOX5O94941 541 aa0.59□□□□□ -2.31
RNU6-539P-201ENST00000516665 FUCA1P04066 466 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms