RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CEP85LQ5SZL2 805 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 PROM2Q8N271 834 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 INPP4AQ96PE3 977 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 NR2F2P24468 414 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 CASP5P51878 434 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 GTF2IP78347 998 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 GLE1Q53GS7 698 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 KAT2BQ92831 832 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 BCAS3Q9H6U6 928 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 PSTPIP2Q9H939 334 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 GDF3Q9NR23 364 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 TSKSQ9UJT2 592 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 CCNL1Q9UK58 526 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 SPATA31A5Q5VU36 1347 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 SPATA31A7Q8IWB4 1347 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 PHLPP1O60346 1717 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 POTEFA5A3E0 1075 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 RIMBP2O15034 1052 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 POTEIP0CG38 1075 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 INPP5BP32019 993 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 GTF2A1P52655 376 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 MRPL12P52815 198 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 MEI1Q5TIA1 1274 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 ICE2Q659A1 982 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 POTEGQ6S5H5 508 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 POTEEQ6S8J3 1075 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 BCCIPQ9P287 314 aaKnown RBP eCLIP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 CETN3O15182 167 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 DCAF17Q5H9S7 520 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 CNBD1Q8NA66 436 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 DLEC1Q9Y238 1755 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 PNMA6FA0A0J9YX94 578 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 RBAK-RBAKDNI3L0D1 243 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 EPB41P11171 864 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 SMARCA1P28370 1054 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 NT5C2P49902 561 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 PABPC4Q13310 644 aaKnown RBP eCLIP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 CDC37Q16543 378 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 PIK3R5Q8WYR1 880 aa10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 RPGRQ92834 1020 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 NUCKS1Q9H1E3 243 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-215ENST00000512632 CYP11B2P19099 503 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 ORC2Q13416 577 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 ASPRV1Q53RT3 343 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 ZNF571Q7Z3V5 609 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 CUL5Q93034 780 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 DDX47Q9H0S4 455 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 RNF14Q9UBS8 474 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 PLAAQ9Y263 795 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 SCN7AQ01118 1682 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 CASZ1Q86V15 1759 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 PLCG2P16885 1265 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 NR1D1P20393 614 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 LSP1P33241 339 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 SNAP25P60880 206 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 PSMC6P62333 389 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 ERVK-9P63128 1117 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 SKOR1P84550 965 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 ZNF543Q08ER8 600 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 PPP4R3AQ6IN85 833 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 PCDHGC5Q9Y5F6 944 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 CNTNAP4Q9C0A0 1308 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 KIAA1551Q9HCM1 1747 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 MED24O75448 989 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 TNNC1P63316 161 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 OTUD6BQ8N6M0 293 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 USP38Q8NB14 1042 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 CEP63Q96MT8 703 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 GGA1Q9UJY5 639 aa10.15□□□□□ -0.78
LIMCH1-215ENST00000512632 FAM196BA6NMK8 535 aa10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 BACH1O14867 736 aa10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 RNF187Q5TA31 235 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 GJB7Q6PEY0 223 aa10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 MXD3Q9BW11 206 aa10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 PPANQ9NQ55 473 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 DDX4Q9NQI0 724 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 HDAC9Q9UKV0 1011 aa10.15□□□□□ -0.79
LIMCH1-215ENST00000512632 H0YHG0 523 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 ARSHQ5FYA8 562 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 ALKBH5Q6P6C2 394 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 RUBCNQ92622 972 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 GANQ9H2C0 597 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 IKZF4Q9H2S9 585 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 KCTD10Q9H3F6 313 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 ARMCX3Q9UH62 379 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 DAGLAQ9Y4D2 1042 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 CAPN7Q9Y6W3 813 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 CLIC2O15247 247 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 CYP4A11Q02928 519 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 SYN2Q92777 582 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 AIPL1Q9NZN9 384 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 PCDHA2Q9Y5H9 948 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 SFI1A8K8P3 1242 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 TULP1O00294 542 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 KIAA0754O94854 1291 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 KIF4AO95239 1232 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 ITGA4P13612 1032 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 SCNN1DP51172 638 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 NAA35Q5VZE5 725 aa10.14□□□□□ -0.79
LIMCH1-215ENST00000512632 SLC30A10Q6XR72 485 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms