RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 DNM1Q05193 864 aaKnown RBP33.4■■■□□ 2.94
LIMCH1-211ENST00000509638 CCSAPQ6IQ19 270 aaPredicted RBP33.4■■■□□ 2.94
LIMCH1-211ENST00000509638 POLR3EQ9NVU0 708 aa33.4■■■□□ 2.94
LIMCH1-211ENST00000509638 CHMP5Q9NZZ3 219 aa33.4■■■□□ 2.94
LIMCH1-211ENST00000509638 PCDHA12Q9UN75 941 aa33.4■■■□□ 2.94
LIMCH1-211ENST00000509638 HOXD8P13378 290 aaPredicted RBP33.39■■■□□ 2.94
LIMCH1-211ENST00000509638 SPIRE1Q08AE8 756 aa33.39■■■□□ 2.94
LIMCH1-211ENST00000509638 PPP2R5CQ13362 524 aa33.39■■■□□ 2.94
LIMCH1-211ENST00000509638 KCNA10Q16322 511 aa33.39■■■□□ 2.94
LIMCH1-211ENST00000509638 DGKDQ16760 1214 aa33.39■■■□□ 2.94
LIMCH1-211ENST00000509638 SMAP1Q8IYB5 467 aaPredicted RBP33.39■■■□□ 2.94
LIMCH1-211ENST00000509638 WDR64B1ANS9 1081 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 ZNF286BP0CG31 522 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 TCF7P36402 384 aaPredicted RBP33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 PRPHP41219 470 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 PTPAQ15257 358 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 B3GNT9Q6UX72 402 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 PCSK9Q8NBP7 692 aaKnown RBP33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 CHAMP1Q96JM3 812 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 TFIP11Q9UBB9 837 aaKnown RBP33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 GSTTP1A0A1W2PQM5 241 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 ZEB2O60315 1214 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 MYL3P08590 195 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 NASPP49321 788 aaPredicted RBP33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 SEPT1Q8WYJ6 367 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 SAMM50Q9Y512 469 aa33.38■■■□□ 2.93
LIMCH1-211ENST00000509638 MYH9P35579 1960 aaKnown RBP33.37■■■□□ 2.93
LIMCH1-211ENST00000509638 CCDC85CA6NKD9 419 aa33.37■■■□□ 2.93
LIMCH1-211ENST00000509638 ASGR1P07306 291 aa33.37■■■□□ 2.93
LIMCH1-211ENST00000509638 TMEM266Q2M3C6 531 aa33.37■■■□□ 2.93
LIMCH1-211ENST00000509638 SCN10AQ9Y5Y9 1956 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 POTEMA6NI47 508 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 JAK3P52333 1124 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 PURAQ00577 322 aaKnown RBP33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 ATL3Q6DD88 541 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 NCAPH2Q6IBW4 605 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 CXCL17Q6UXB2 119 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 TRIM50Q86XT4 487 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 ANKLE1Q8NAG6 615 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 TSEN34Q9BSV6 310 aaKnown RBP33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 DISC1Q9NRI5 854 aa33.36■■■□□ 2.93
LIMCH1-211ENST00000509638 PPFIA4O75335 1185 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 LGALS2P05162 132 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 SUPT20HL2P0C7V6 817 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 EN2P19622 333 aaPredicted RBP33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 SFNP31947 248 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 TECP42680 631 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 MNX1P50219 401 aaPredicted RBP33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 ACLYP53396 1101 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 SOX10P56693 466 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 ARL6IP4Q66PJ3 421 aaKnown RBP33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 ABHD15Q6UXT9 468 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 MIER3Q7Z3K6 550 aa33.35■■■□□ 2.93
LIMCH1-211ENST00000509638 MOXD2PA6NHM9 499 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 ATG7O95352 703 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 NCLP19338 710 aaKnown RBP33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 FXR2P51116 673 aaKnown RBP eCLIP33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 STK38Q15208 465 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 UTP14CQ5TAP6 766 aaKnown RBP33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 MIS18BP1Q6P0N0 1132 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 DTHD1Q6ZMT9 781 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 PHF24Q9UPV7 400 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 PCDHA10Q9Y5I2 948 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 EMSYQ7Z589 1322 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 EML1O00423 815 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 CAPN2P17655 700 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 IL17AQ16552 155 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 RDM1Q8NG50 284 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 DIS3LQ8TF46 1054 aaKnown RBP33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 CFAP45Q9UL16 551 aa33.34■■■□□ 2.93
LIMCH1-211ENST00000509638 VWA3AA6NCI4 1184 aa33.33■■■□□ 2.93
LIMCH1-211ENST00000509638 KPNA6O60684 536 aa33.33■■■□□ 2.93
LIMCH1-211ENST00000509638 YEATS4O95619 227 aa33.33■■■□□ 2.93
LIMCH1-211ENST00000509638 KRT85P78386 507 aa33.33■■■□□ 2.93
LIMCH1-211ENST00000509638 SLC39A14Q15043 492 aa33.33■■■□□ 2.93
LIMCH1-211ENST00000509638 CCDC60Q8IWA6 550 aaPredicted RBP33.33■■■□□ 2.93
LIMCH1-211ENST00000509638 LINC00301Q8NCQ3 95 aa33.33■■■□□ 2.93
LIMCH1-211ENST00000509638 A0A1W2PQ45 241 aaPredicted RBP33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 A0A1W2PQY0 241 aa33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 BACH1O14867 736 aa33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 F2P00734 622 aa33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 PSAPP07602 524 aa33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 MARCKSP29966 332 aaPredicted RBP33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 PCYT2Q99447 389 aa33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 C16orf70Q9BSU1 422 aa33.32■■■□□ 2.92
LIMCH1-211ENST00000509638 FERMT2Q96AC1 680 aa33.31■■■□□ 2.92
LIMCH1-211ENST00000509638 MTG1Q9BT17 334 aaPredicted RBP33.31■■■□□ 2.92
LIMCH1-211ENST00000509638 RAB34Q9BZG1 259 aa33.31■■■□□ 2.92
LIMCH1-211ENST00000509638 AZI2Q9H6S1 392 aa33.31■■■□□ 2.92
LIMCH1-211ENST00000509638 IGKV6D-21A0A0A0MT36 114 aa33.3■■■□□ 2.92
LIMCH1-211ENST00000509638 LGR5O75473 907 aa33.3■■■□□ 2.92
LIMCH1-211ENST00000509638 IGSF22Q8N9C0 903 aa33.3■■■□□ 2.92
LIMCH1-211ENST00000509638 GLG1Q92896 1179 aa33.3■■■□□ 2.92
LIMCH1-211ENST00000509638 MORC2Q9Y6X9 1032 aaPredicted RBP33.3■■■□□ 2.92
LIMCH1-211ENST00000509638 KAT2BQ92831 832 aa33.3■■■□□ 2.92
LIMCH1-211ENST00000509638 ZNF215Q9UL58 517 aaPredicted RBP33.3■■■□□ 2.92
LIMCH1-211ENST00000509638 IGSF9BQ9UPX0 1349 aa33.29■■■□□ 2.92
LIMCH1-211ENST00000509638 SPTLC2O15270 562 aa33.29■■■□□ 2.92
LIMCH1-211ENST00000509638 FAM160B1Q5W0V3 765 aa33.29■■■□□ 2.92
LIMCH1-211ENST00000509638 SWSAP1Q6NVH7 229 aa33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms