RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 LRCH2Q5VUJ6 765 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 HAUS3Q68CZ6 603 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 ERMNQ8TAM6 284 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 ATP6V0A1Q93050 837 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 FERMT2Q96AC1 680 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 ZNF396Q96N95 335 aaPredicted RBP9.55□□□□□ -0.88
PDGFC-205ENST00000506880 MTMR9Q96QG7 549 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 PURBQ96QR8 312 aaKnown RBP9.55□□□□□ -0.88
PDGFC-205ENST00000506880 GPR20Q99678 358 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 JPH2Q9BR39 696 aaPredicted RBP9.55□□□□□ -0.88
PDGFC-205ENST00000506880 C11orf49Q9H6J7 331 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 PDGFCQ9NRA1 345 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 TMEM260Q9NX78 707 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 CFAP45Q9UL16 551 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 PCDHA12Q9UN75 941 aa9.55□□□□□ -0.88
PDGFC-205ENST00000506880 DOCK5Q9H7D0 1870 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 HAS3O00219 553 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 TLR3O15455 904 aaKnown RBP9.54□□□□□ -0.88
PDGFC-205ENST00000506880 MSH4O15457 936 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 DHX15O43143 795 aaKnown RBP9.54□□□□□ -0.88
PDGFC-205ENST00000506880 MARCH6O60337 910 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 LYPLA2O95372 231 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 ARIH2O95376 493 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 ASGR1P07306 291 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 OR52Z1P0C646 297 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 ZSCAN22P10073 491 aaPredicted RBP9.54□□□□□ -0.88
PDGFC-205ENST00000506880 HOXC8P31273 242 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 ATP2C1P98194 919 aaPredicted RBP9.54□□□□□ -0.88
PDGFC-205ENST00000506880 KCNA10Q16322 511 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 LY6KQ17RY6 165 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 MCTP1Q6DN14 999 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 EEPD1Q7L9B9 569 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 RPAINQ86UA6 219 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 CCDC155Q8N6L0 562 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 RASGRP4Q8TDF6 673 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 OXER1Q8TDS5 423 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 PYM1Q9BRP8 204 aaKnown RBP9.54□□□□□ -0.88
PDGFC-205ENST00000506880 STARD7Q9NQZ5 370 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 MTMR6Q9Y217 621 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 MAFBQ9Y5Q3 323 aaPredicted RBP9.54□□□□□ -0.88
PDGFC-205ENST00000506880 NRCAMQ92823 1304 aa9.54□□□□□ -0.88
PDGFC-205ENST00000506880 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.53□□□□□ -0.88
PDGFC-205ENST00000506880 A0A1W2PQ45 241 aaPredicted RBP9.53□□□□□ -0.88
PDGFC-205ENST00000506880 A0A1W2PQY0 241 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 CCDC85CA6NKD9 419 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 H3BRB1 525 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 ARVCFO00192 962 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 HBP1O60381 514 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 YEATS4O95619 227 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 P4HBP07237 508 aaKnown RBP9.53□□□□□ -0.88
PDGFC-205ENST00000506880 ARP10275 920 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 SCP2P22307 547 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 MNX1P50219 401 aaPredicted RBP9.53□□□□□ -0.88
PDGFC-205ENST00000506880 CDK7P50613 346 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 ACTR2P61160 394 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 SP2Q02086 613 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 RBL2Q08999 1139 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 EPHA7Q15375 998 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 HSDL1Q3SXM5 330 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 TAF2Q6P1X5 1199 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 ABHD15Q6UXT9 468 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 CYFIP1Q7L576 1253 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 AFG1LQ8WV93 481 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 BBXQ8WY36 941 aaPredicted RBP9.53□□□□□ -0.88
PDGFC-205ENST00000506880 TUT1Q9H6E5 874 aaKnown RBP9.53□□□□□ -0.88
PDGFC-205ENST00000506880 TUFT1Q9NNX1 390 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 DISC1Q9NRI5 854 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 RTEL1Q9NZ71 1219 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 KCNG1Q9UIX4 513 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 NR2E3Q9Y5X4 410 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 IGSF9BQ9UPX0 1349 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 KDM3AQ9Y4C1 1321 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 CEP290O15078 2479 aa9.53□□□□□ -0.88
PDGFC-205ENST00000506880 VPS37CA5D8V6 355 aaPredicted RBP9.52□□□□□ -0.89
PDGFC-205ENST00000506880 DCDC2CA8MYV0 355 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 PITPNM1O00562 1244 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 MAGEB2O15479 319 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 ADCY6O43306 1168 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 EDIL3O43854 480 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 PPP6R2O75170 966 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 ECM2O94769 699 aaPredicted RBP9.52□□□□□ -0.89
PDGFC-205ENST00000506880 TDP2O95551 362 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 BRD1O95696 1058 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 PGK1P00558 417 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 LGALS2P05162 132 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 TCF7P36402 384 aaPredicted RBP9.52□□□□□ -0.89
PDGFC-205ENST00000506880 LONP1P36776 959 aaKnown RBP9.52□□□□□ -0.89
PDGFC-205ENST00000506880 NASPP49321 788 aaPredicted RBP9.52□□□□□ -0.89
PDGFC-205ENST00000506880 STAT5BP51692 787 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 PSMC5P62195 406 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 RESTQ13127 1097 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 ITGB3BPQ13352 177 aaPredicted RBP9.52□□□□□ -0.89
PDGFC-205ENST00000506880 ITGA7Q13683 1181 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 CSPP1Q1MSJ5 1256 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 ZNF484Q5JVG2 852 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 SLC39A5Q6ZMH5 540 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 DTHD1Q6ZMT9 781 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 OTUD6AQ7L8S5 288 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 C4orf19Q8IY42 314 aa9.52□□□□□ -0.89
PDGFC-205ENST00000506880 IGSF22Q8N9C0 903 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms