RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 FAM129AQ9BZQ8 928 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 TOGARAM1Q9Y4F4 1720 aa18.73■□□□□ 0.59
SQSTM1-211ENST00000506690 A0A0G2JS52 829 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 KIF3CO14782 793 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 TMED8Q6PL24 325 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 KIRREL3Q8IZU9 778 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 ZNF317Q96PQ6 595 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 BAIAP2L1Q9UHR4 511 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 CCDC88AQ3V6T2 1871 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 MYMKA6NI61 221 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 F8VZ95 297 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 KRT71Q3SY84 523 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 SV2BQ7L1I2 683 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 TBC1D31Q96DN5 1066 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 TANGO6Q9C0B7 1094 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 BATF3Q9NR55 127 aa18.72■□□□□ 0.59
SQSTM1-211ENST00000506690 IRX1P78414 480 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 LRRC4CQ9HCJ2 640 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 BLOC1S4Q9NUP1 217 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 AIPL1Q9NZN9 384 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 ADAMTS1Q9UHI8 967 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 CCDC188H7C350 402 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 DAPK3O43293 454 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 CEP104O60308 925 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 POLR2FP61218 127 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 ITIH4Q14624 930 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 C11orf91Q3C1V1 193 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 CEP120Q8N960 986 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 MDM1Q8TC05 714 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 STAMBPL1Q96FJ0 436 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 AP1M1Q9BXS5 423 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 DDX47Q9H0S4 455 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 SLC24A3Q9HC58 644 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 TMOD3Q9NYL9 352 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 LAMB1P07942 1786 aa18.71■□□□□ 0.59
SQSTM1-211ENST00000506690 ZNF804BA4D1E1 1349 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 SLIT2O94813 1529 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 STXBP3O00186 592 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 PGRMC1O00264 195 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 ASAP2O43150 1006 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 BUB1BO60566 1050 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 GRIK3Q13003 919 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 PIGWQ7Z7B1 504 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 PROM2Q8N271 834 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 ANKS4BQ8N8V4 417 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 LRRC57Q8N9N7 239 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 NSMCE1Q8WV22 266 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 CALML4Q96GE6 196 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 RIC8AQ9NPQ8 531 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 BARHL2Q9NY43 387 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 ASAP1Q9ULH1 1129 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 ATAD5Q96QE3 1844 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 CTNND1O60716 968 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 TECP42680 631 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 ZKSCAN8Q15776 578 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 SPDYCQ5MJ68 293 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 NAIF1Q69YI7 327 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 CCDC63Q8NA47 563 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 PROCA1Q8NCQ7 364 aaPredicted RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 ZNF384Q8TF68 577 aa18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 LSM14BQ9BX40 385 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 NOC2LQ9Y3T9 749 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-211ENST00000506690 COL1A1P02452 1464 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 HOXA7P31268 230 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 EIF3BP55884 814 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 DHX9Q08211 1270 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 SLC35G1Q2M3R5 365 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 ZNF34Q8IZ26 560 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 CCHCR1Q8TD31 782 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 TXLNGYQ9BZA5 131 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 SLITRK6Q9H5Y7 841 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 C15orf41Q9Y2V0 281 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 COL4A3BPQ9Y5P4 624 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 CCNT1O60563 726 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 KLHL30Q0D2K2 578 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 MYO1EQ12965 1108 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 GRB10Q13322 594 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 C10orf76Q5T2E6 689 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 TSG101Q99816 390 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 KCNMB3Q9NPA1 279 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 STK17AQ9UEE5 414 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 AMACRQ9UHK6 382 aa18.69■□□□□ 0.58
SQSTM1-211ENST00000506690 CFAP73A6NFT4 308 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 RAPGEF1Q13905 1077 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 ZCWPW2Q504Y3 356 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 HEATR3Q7Z4Q2 680 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 RASGEF1CQ8N431 466 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 METTL13Q8N6R0 699 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 MAD2L2Q9UI95 211 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 TSPY2A6NKD2 308 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 KRIT1O00522 736 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 PPFIA2O75334 1257 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 CALRP27797 417 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 CCNHP51946 323 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 ZNF268Q14587 947 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 GRM4Q14833 912 aa18.68■□□□□ 0.58
SQSTM1-211ENST00000506690 LETM2Q2VYF4 491 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms