RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 WNT8BQ93098 351 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 RNPEPQ9H4A4 650 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 PKD2L1Q9P0L9 805 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 CCDC196A0A1B0GTZ2 297 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 CXCL10P02778 98 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 CA3P07451 260 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 ITGB5P18084 799 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 ADCY7P51828 1080 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 RCAN1P53805 252 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 EVCP57679 992 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 TRIM50Q86XT4 487 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 HERC6Q8IVU3 1022 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 BRF1Q92994 677 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 RIC8AQ9NPQ8 531 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 SETD4Q9NVD3 440 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 UBIAD1Q9Y5Z9 338 aa20.55■□□□□ 0.88
SQSTM1-209ENST00000504627 TET1Q8NFU7 2136 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 SMCO2A6NFE2 343 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 RSPH10B2B2RC85 870 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 MAFGO15525 162 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 TREHO43280 583 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 ATP9AO75110 1047 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 FOSP01100 380 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 RSPH10BP0C881 870 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 KCNA2P16389 499 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 CDC27P30260 824 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 TCF7P36402 384 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 WDR5P61964 334 aaKnown RBP20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 APOBRQ0VD83 1088 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 FUT2Q10981 343 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 CUL4AQ13619 759 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 IKBKEQ14164 716 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 SEPT1Q8WYJ6 367 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 ZBED2Q9BTP6 218 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 GLT8D2Q9H1C3 349 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 JADE2Q9NQC1 790 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 TPCN1Q9ULQ1 816 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 TELO2Q9Y4R8 837 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 CHD9Q3L8U1 2897 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 GBF1Q92538 1859 aa20.54■□□□□ 0.88
SQSTM1-209ENST00000504627 EMSYQ7Z589 1322 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 ABHD14A-ACY1A0A1B0GW23 586 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 STXBP3O00186 592 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 TLL1O43897 1013 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 EFCAB14O75071 495 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 ADD1P35611 737 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 TYW1BQ6NUM6 668 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 TEX2Q8IWB9 1127 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 PGBD1Q96JS3 809 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 FAM217BQ9NTX9 383 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 BARHL2Q9NY43 387 aa20.53■□□□□ 0.88
SQSTM1-209ENST00000504627 PRUNE2Q8WUY3 3088 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 LGR5O75473 907 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 HSP90AA1P07900 732 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 HOXC8P31273 242 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 ARHGAP4P98171 946 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 ADGRE1Q14246 886 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 TRAF7Q6Q0C0 670 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 GLG1Q92896 1179 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 INTS4Q96HW7 963 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 ANO3Q9BYT9 981 aa20.52■□□□□ 0.88
SQSTM1-209ENST00000504627 DOCK5Q9H7D0 1870 aa20.52■□□□□ 0.87
SQSTM1-209ENST00000504627 NID2Q14112 1375 aa20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 CTSHP09668 335 aa20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 CCDC85BQ15834 202 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 ME3Q16798 604 aa20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 USP38Q8NB14 1042 aa20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 ZNF274Q96GC6 653 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 MXRA8Q9BRK3 442 aa20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 CERS4Q9HA82 394 aa20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 NRCAMQ92823 1304 aa20.51■□□□□ 0.87
SQSTM1-209ENST00000504627 GSTTP1A0A1W2PQM5 241 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 CAND2O75155 1236 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 LARGE1O95461 756 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 MARK3P27448 753 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 ZNF76P36508 570 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 DEFB103AP81534 67 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 AKAP17AQ02040 695 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 AP3B2Q13367 1082 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 MBTPS1Q14703 1052 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 PFKFB3Q16875 520 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 TMCO2Q7Z6W1 182 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 GTF3C6Q969F1 213 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 SDF4Q9BRK5 362 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 COL25A1Q9BXS0 654 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 JPH1Q9HDC5 661 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 KCNH7Q9NS40 1196 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 TMEM260Q9NX78 707 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 ERAP1Q9NZ08 941 aa20.5■□□□□ 0.87
SQSTM1-209ENST00000504627 CUL9Q8IWT3 2517 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 PFKFB2O60825 505 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 SCG2P13521 617 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 TCTN1Q2MV58 587 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 CEP55Q53EZ4 464 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 MICALL1Q8N3F8 863 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 DBF4BQ8NFT6 615 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 CYP2W1Q8TAV3 490 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 CCDC12Q8WUD4 166 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 LMBR1Q8WVP7 490 aa20.49■□□□□ 0.87
SQSTM1-209ENST00000504627 ARNTL2Q8WYA1 636 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms