RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PRDM15P57071 1507 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 SLFN14P0C7P3 912 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 GNAT1P11488 350 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 PRDX5P30044 214 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 CDC25AP30304 524 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 ECE1P42892 770 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 JAK3P52333 1124 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 EHHADHQ08426 723 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 SF3A3Q12874 501 aaKnown RBP eCLIP14.24□□□□□ -0.135e-9■■□□□ 12.7
PTPRF-215ENST00000496447 TCP11Q8WWU5 503 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 GJD4Q96KN9 370 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 VCX3BQ9H321 246 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 CASP14P31944 242 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 ARL4AP40617 200 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 AP3B2Q13367 1082 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 ARMCX2Q7L311 632 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 BCAS4Q8TDM0 211 aa14.24□□□□□ -0.13
PTPRF-215ENST00000496447 STRBPQ96SI9 672 aaKnown RBP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 FTOQ9C0B1 505 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTPRF-215ENST00000496447 EIF3CLB5ME19 914 aaKnown RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 K7ERI5 159 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 MYO1CO00159 1063 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 CD58P19256 250 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 LMNB2Q03252 620 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 EIF3CQ99613 913 aaKnown RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 RAVER2Q9HCJ3 691 aaKnown RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 GCNT4Q9P109 453 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 CYP2D6P10635 497 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 KRT10P13645 584 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 PLCG1P19174 1290 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 MXI1P50539 228 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 ETF1P62495 437 aaKnown RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 ALCAMQ13740 583 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 OR6B2Q6IFH4 312 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 TRIM4Q9C037 500 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 UBE2TQ9NPD8 197 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 TNS3Q68CZ2 1445 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 ABCC3O15438 1527 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 SNRNP48Q6IEG0 339 aaKnown RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 DNAJC24Q6P3W2 148 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 RNF139Q8WU17 664 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 MRFAP1L1Q96HT8 127 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 PYCARDQ9ULZ3 195 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 TXNRD1Q16881 649 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 GRAMD1CQ8IYS0 662 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 PARD3BQ8TEW8 1205 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 RABGGTAQ92696 567 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 CELF1Q92879 486 aaKnown RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 HEXIM2Q96MH2 286 aaKnown RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 RMDN3Q96TC7 470 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 PTCH1Q13635 1447 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 EN1Q05925 392 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 SCARA5Q6ZMJ2 495 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 GIMAP8Q8ND71 665 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 RUNDC3BQ96NL0 473 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 RAB3IPQ96QF0 476 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-215ENST00000496447 ARHGAP31Q2M1Z3 1444 aa14.23□□□□□ -0.13
PTPRF-215ENST00000496447 WDR46O15213 610 aaKnown RBP14.22□□□□□ -0.13
PTPRF-215ENST00000496447 PLEKHA8P1O95397 391 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 MTMR1Q13613 665 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 LRRC8AQ8IWT6 810 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 HOMER3Q9NSC5 361 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 AXIN2Q9Y2T1 843 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 PLEKHG2Q9H7P9 1386 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 PSMD2Q13200 908 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 SLFN12LQ6IEE8 588 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 ZNF449Q6P9G9 518 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 FAM167AQ96KS9 214 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 PREX2Q70Z35 1606 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 SLC4A1P02730 911 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 CYP19A1P11511 503 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-215ENST00000496447 ACTN1P12814 892 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 CDC25BP30305 580 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 TMED8Q6PL24 325 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-215ENST00000496447 NOP9Q86U38 636 aaKnown RBP14.22□□□□□ -0.13
PTPRF-215ENST00000496447 TRMT2AQ8IZ69 625 aaKnown RBP14.22□□□□□ -0.13
PTPRF-215ENST00000496447 SH3GLB2Q9NR46 395 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 PTPN22Q9Y2R2 807 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 USP17L10C9JJH3 530 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 ZBTB5O15062 677 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 GPT2Q8TD30 523 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 PCDHA6Q9UN73 950 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 PCDHA8Q9Y5H6 950 aa14.22□□□□□ -0.13
PTPRF-215ENST00000496447 LRRD1A4D1F6 860 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 PCDHB6Q9Y5E3 794 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 HEXIM1O94992 359 aaKnown RBP14.21□□□□□ -0.13
PTPRF-215ENST00000496447 KRT1P04264 644 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 LINC00301Q8NCQ3 95 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 STAG1Q8WVM7 1258 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 BHMT2Q9H2M3 363 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 MRPL47Q9HD33 250 aaKnown RBP14.21□□□□□ -0.13
PTPRF-215ENST00000496447 SLC8A2Q9UPR5 921 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 GOLGA8IPA6NC78 632 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 GOLGA8JA6NMD2 632 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 FAM196BA6NMK8 535 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 GFPT2O94808 682 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 PHLDB2Q86SQ0 1253 aa14.21□□□□□ -0.13
PTPRF-215ENST00000496447 CEP120Q8N960 986 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms