RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, human

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-233	ENST00000496030	PBX2	P40425	430 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	TOB1	P50616	345 aa	Predicted RBP	13.51	□□□□□ -0.25
APTX-233	ENST00000496030	FSCN1	Q16658	493 aa	Known RBP	13.51	□□□□□ -0.25
APTX-233	ENST00000496030		Q4G0T1	1027 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	PRR16	Q569H4	304 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	GNAS	Q5JWF2	1037 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	C1orf53	Q5VUE5	145 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	PPP4R3A	Q6IN85	833 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	MOXD1	Q6UVY6	613 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	NEK8	Q86SG6	692 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	PLA2G4D	Q86XP0	818 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	NOSTRIN	Q8IVI9	506 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	CDHR1	Q96JP9	859 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	AP5M1	Q9H0R1	490 aa		13.51	□□□□□ -0.25
APTX-233	ENST00000496030	GRXCR1	A8MXD5	290 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	KIAA0355	O15063	1070 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	MSH4	O15457	936 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	SLC37A4	O43826	429 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	SORBS3	O60504	671 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	CLTB	P09497	229 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	C6orf222	P0C671	652 aa	Predicted RBP	13.5	□□□□□ -0.25
APTX-233	ENST00000496030	HOXD8	P13378	290 aa	Predicted RBP	13.5	□□□□□ -0.25
APTX-233	ENST00000496030	LAMC2	Q13753	1193 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	NEDD9	Q14511	834 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	KCNA10	Q16322	511 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	LETM2	Q2VYF4	491 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	HSDL1	Q3SXM5	330 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	CYFIP1	Q7L576	1253 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	RNF180	Q86T96	592 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	DHX37	Q8IY37	1157 aa	Known RBP	13.5	□□□□□ -0.25
APTX-233	ENST00000496030	SPRYD3	Q8NCJ5	442 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	OR6J1	Q8NGC5	347 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	AFG1L	Q8WV93	481 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	UIMC1	Q96RL1	719 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	GAS2L1	Q99501	681 aa	Predicted RBP	13.5	□□□□□ -0.25
APTX-233	ENST00000496030	TSEN34	Q9BSV6	310 aa	Known RBP	13.5	□□□□□ -0.25
APTX-233	ENST00000496030	PHF24	Q9UPV7	400 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	MTMR6	Q9Y217	621 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	GBF1	Q92538	1859 aa		13.5	□□□□□ -0.25
APTX-233	ENST00000496030	MUC6	Q6W4X9	2439 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030		H3BQV1	296 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	RAG1	P15918	1043 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	PDC	P20941	246 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	ACLY	P53396	1101 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	FPGS	Q05932	587 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	METTL7B	Q6UX53	244 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	PPTC7	Q8NI37	304 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	ETNPPL	Q8TBG4	499 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	SLC5A5	Q92911	643 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	GJA10	Q969M2	543 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	PBX4	Q9BYU1	374 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	PKD2L1	Q9P0L9	805 aa		13.49	□□□□□ -0.25
APTX-233	ENST00000496030	NFASC	O94856	1347 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	GSTTP1	A0A1W2PQM5	241 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	IPO5	O00410	1097 aa	Known RBP	13.48	□□□□□ -0.25
APTX-233	ENST00000496030	CCNT1	O60563	726 aa	Known RBP	13.48	□□□□□ -0.25
APTX-233	ENST00000496030	CCNE2	O96020	404 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	ASGR1	P07306	291 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	MMP3	P08254	477 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	GCFC2	P16383	781 aa	Known RBP	13.48	□□□□□ -0.25
APTX-233	ENST00000496030	SET	Q01105	290 aa	Predicted RBP	13.48	□□□□□ -0.25
APTX-233	ENST00000496030	B3GNT9	Q6UX72	402 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	GIMAP8	Q8ND71	665 aa	Predicted RBP	13.48	□□□□□ -0.25
APTX-233	ENST00000496030	HAS1	Q92839	578 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	SPATA33	Q96N06	139 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	GPR20	Q99678	358 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.48	□□□□□ -0.25	3e-6	■■□□□ 12.8
APTX-233	ENST00000496030	C1QTNF1	Q9BXJ1	281 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	MLXIP	Q9HAP2	919 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	SPC25	Q9HBM1	224 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	KCNMB3	Q9NPA1	279 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	DDX25	Q9UHL0	483 aa	Known RBP	13.48	□□□□□ -0.25
APTX-233	ENST00000496030	TRANK1	O15050	2925 aa		13.48	□□□□□ -0.25
APTX-233	ENST00000496030	SCN10A	Q9Y5Y9	1956 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	GRIN2D	O15399	1336 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	STX6	O43752	255 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	PQBP1	O60828	265 aa	Known RBP	13.47	□□□□□ -0.25
APTX-233	ENST00000496030	PPFIA4	O75335	1185 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	PSMD10	O75832	226 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	BMP1	P13497	986 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	CPT1A	P50416	773 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	PURA	Q00577	322 aa	Known RBP	13.47	□□□□□ -0.25
APTX-233	ENST00000496030	MCTP1	Q6DN14	999 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	CXCL17	Q6UXB2	119 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	C16orf59	Q7L2K0	433 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	C4orf32	Q8N8J7	132 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	PCSK9	Q8NBP7	692 aa	Known RBP	13.47	□□□□□ -0.25
APTX-233	ENST00000496030	KAT2B	Q92831	832 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	RIT2	Q99578	217 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	ZNF577	Q9BSK1	485 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030	LRFN3	Q9BTN0	628 aa		13.47	□□□□□ -0.25
APTX-233	ENST00000496030		A0A1W2PQ45	241 aa	Predicted RBP	13.46	□□□□□ -0.25
APTX-233	ENST00000496030		A0A1W2PQY0	241 aa		13.46	□□□□□ -0.25
APTX-233	ENST00000496030	VPS37C	A5D8V6	355 aa	Predicted RBP	13.46	□□□□□ -0.25
APTX-233	ENST00000496030	MOXD2P	A6NHM9	499 aa		13.46	□□□□□ -0.25
APTX-233	ENST00000496030	ATG7	O95352	703 aa		13.46	□□□□□ -0.25
APTX-233	ENST00000496030	HSP90AA1	P07900	732 aa	Known RBP	13.46	□□□□□ -0.25
APTX-233	ENST00000496030	ATP2B1	P20020	1258 aa		13.46	□□□□□ -0.25
APTX-233	ENST00000496030	IGFBP4	P22692	258 aa		13.46	□□□□□ -0.25
APTX-233	ENST00000496030	TRAPPC10	P48553	1259 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms