RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 FOSL2P15408 326 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 THPOP40225 353 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 RCAN1P53805 252 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 DEFB103AP81534 67 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 PPP1R18Q6NYC8 613 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 SPRED2Q7Z698 418 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 SERINC5Q86VE9 423 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 CCDC155Q8N6L0 562 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 AFAP1L1Q8TED9 768 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 PCYT2Q99447 389 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 SLC26A6Q9BXS9 759 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 MTIF3Q9H2K0 278 aaKnown RBP12.14□□□□□ -0.47
NELFE-213ENST00000494956 KCNH7Q9NS40 1196 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 MSRAQ9UJ68 235 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 NID2Q14112 1375 aa12.14□□□□□ -0.47
NELFE-213ENST00000494956 TMEM265A0A087WTH1 108 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 PFKMP08237 780 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 CTSHP09668 335 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 HOXC8P31273 242 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 RFC2P35250 354 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 SREBF1P36956 1147 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 ARHGAP4P98171 946 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 RBL2Q08999 1139 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 ITGB3BPQ13352 177 aaPredicted RBP12.13□□□□□ -0.47
NELFE-213ENST00000494956 RUFY4Q6ZNE9 571 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 FBXL16Q8N461 479 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 USP38Q8NB14 1042 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 MAFAQ8NHW3 353 aaPredicted RBP12.13□□□□□ -0.47
NELFE-213ENST00000494956 LMBR1Q8WVP7 490 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 SEPT1Q8WYJ6 367 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 AIFM3Q96NN9 605 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 CERS4Q9HA82 394 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 VPS54Q9P1Q0 977 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 SSUH2Q9Y2M2 353 aa12.13□□□□□ -0.47
NELFE-213ENST00000494956 LOXHD1Q8IVV2 1947 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 MICAL3Q7RTP6 2002 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 CCDC196A0A1B0GTZ2 297 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 FAM86B1E9PN63 330 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 hCG_1984214I3L0E3 225 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 RFXAPO00287 272 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 CA3P07451 260 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 FAM86B2P0C5J1 330 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 ACTN1P12814 892 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 EVCP57679 992 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 WDR5P61964 334 aaKnown RBP12.12□□□□□ -0.47
NELFE-213ENST00000494956 ADAM17P78536 824 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 ADGRE1Q14246 886 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 RAB30Q15771 203 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 CEP55Q53EZ4 464 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 ZNF713Q8N859 430 aaPredicted RBP12.12□□□□□ -0.47
NELFE-213ENST00000494956 PPM1EQ8WY54 764 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 ZMYND12Q9H0C1 365 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 EHMT1Q9H9B1 1298 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 SLC28A3Q9HAS3 691 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 AGO4Q9HCK5 861 aaKnown RBP12.12□□□□□ -0.47
NELFE-213ENST00000494956 PRDM6Q9NQX0 595 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 PDRG1Q9NUG6 133 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 SLC9A2Q9UBY0 812 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 CYP46A1Q9Y6A2 500 aa12.12□□□□□ -0.47
NELFE-213ENST00000494956 CHD9Q3L8U1 2897 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 LCHNA4D1U4 455 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 EPOPA6NHQ4 379 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 RSPH10B2B2RC85 870 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 MEIS1O00470 390 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 EDIL3O43854 480 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 FOSP01100 380 aaPredicted RBP12.11□□□□□ -0.47
NELFE-213ENST00000494956 CXCL10P02778 98 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 RSPH10BP0C881 870 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 IFNAR1P17181 557 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 ZNF76P36508 570 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 ACTR2P61160 394 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 IGBP1P78318 339 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 AP3B2Q13367 1082 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 PPP2R2DQ66LE6 453 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 FAM117BQ6P1L5 589 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.11□□□□□ -0.47
NELFE-213ENST00000494956 PLA2G4DQ86XP0 818 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 HERC6Q8IVU3 1022 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 GIMAP8Q8ND71 665 aaPredicted RBP12.11□□□□□ -0.47
NELFE-213ENST00000494956 DBF4BQ8NFT6 615 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 TRAPPC12Q8WVT3 735 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 CRYGNQ8WXF5 182 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 GLG1Q92896 1179 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 CDHR1Q96JP9 859 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 RNF26Q9BY78 433 aaPredicted RBP12.11□□□□□ -0.47
NELFE-213ENST00000494956 JPH1Q9HDC5 661 aaPredicted RBP12.11□□□□□ -0.47
NELFE-213ENST00000494956 ZNF215Q9UL58 517 aaPredicted RBP12.11□□□□□ -0.47
NELFE-213ENST00000494956 PCDHA11Q9Y5I1 949 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 WDR81Q562E7 1941 aa12.11□□□□□ -0.47
NELFE-213ENST00000494956 IGLV3-22A0A075B6J6 115 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 ESYT2A0FGR8 921 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 EPB41L2O43491 1005 aaKnown RBP12.1□□□□□ -0.47
NELFE-213ENST00000494956 SEC24BO95487 1268 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 CCNE2O96020 404 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 KCNJ6P48051 423 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 AKAP17AQ02040 695 aaKnown RBP12.1□□□□□ -0.47
NELFE-213ENST00000494956 PPFIA1Q13136 1202 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 GRIK4Q16099 956 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 CNKSR3Q6P9H4 555 aa12.1□□□□□ -0.47
NELFE-213ENST00000494956 REXO1Q8N1G1 1221 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms