RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 MSH2P43246 934 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 GRAPQ13588 217 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 SGO2Q562F6 1265 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 GRAPLQ8TC17 118 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-212ENST00000491769 HOXC10Q9NYD6 342 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 TSR3Q9UJK0 312 aaKnown RBP14.18□□□□□ -0.14
COL6A3-212ENST00000491769 SLC4A7Q9Y6M7 1214 aa14.18□□□□□ -0.14
COL6A3-212ENST00000491769 CHEK2O96017 543 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 CPB1P15086 417 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 SLC27A3Q5K4L6 730 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 EDEM3Q9BZQ6 932 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 NR1H4Q96RI1 486 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-212ENST00000491769 ARHGAP25P42331 645 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 UBE3CQ15386 1083 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 TRIM68Q6AZZ1 485 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 NUDT18Q6ZVK8 323 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 DDX53Q86TM3 631 aaKnown RBP14.17□□□□□ -0.14
COL6A3-212ENST00000491769 EAF2Q96CJ1 260 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-212ENST00000491769 FAM81BQ96LP2 452 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 MTIF3Q9H2K0 278 aaKnown RBP14.17□□□□□ -0.14
COL6A3-212ENST00000491769 COG4Q9H9E3 785 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 OGFRQ9NZT2 677 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 A0A1B0GUA9 196 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 GH2P01242 217 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 MYL1P05976 194 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 HADHAP40939 763 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 DRP2Q13474 957 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 KLC3Q6P597 504 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 XAB2Q9HCS7 855 aaKnown RBP14.17□□□□□ -0.14
COL6A3-212ENST00000491769 MRPL47Q9HD33 250 aaKnown RBP14.17□□□□□ -0.14
COL6A3-212ENST00000491769 GFPT2O94808 682 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 IFNA8P32881 189 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 ATP1A2P50993 1020 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 SLC10A5Q5PT55 438 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 RUNDC3BQ96NL0 473 aa14.17□□□□□ -0.14
COL6A3-212ENST00000491769 HUS1O60921 280 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 ARHGDIAP52565 204 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 CYP4F22Q6NT55 531 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 C17orf53Q8N3J3 647 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 WDR48Q8TAF3 677 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 GBP5Q96PP8 586 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 SARS2Q9NP81 518 aaKnown RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 ADCY9O60503 1353 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 LRRD1A4D1F6 860 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 LAD1O00515 517 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 SNRNP48Q6IEG0 339 aaKnown RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 LRRC31Q6UY01 552 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 TEKT4Q8WW24 435 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 COA1Q9GZY4 146 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 FAM83BQ5T0W9 1011 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 CCDC124Q96CT7 223 aaKnown RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 PARVGQ9HBI0 331 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 TOPORSQ9NS56 1045 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 DOLKQ9UPQ8 538 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 ASNSP08243 561 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 TMED2Q15363 201 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 ARHGEF1Q92888 912 aaKnown RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 PBXIP1Q96AQ6 731 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 ASIC4Q96FT7 647 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 GCNT4Q9P109 453 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 KIAA1468Q9P260 1216 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 CLIC4Q9Y696 253 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 SEC24BO95487 1268 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 GCFC2P16383 781 aaKnown RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 ARL4DP49703 201 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 PEX3P56589 373 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 TTC23LQ6PF05 361 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 IL17REQ8NFR9 667 aa14.16□□□□□ -0.14
COL6A3-212ENST00000491769 DHX38Q92620 1227 aaKnown RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 TSPYL2Q9H2G4 693 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-212ENST00000491769 USP28Q96RU2 1077 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 FAN1Q9Y2M0 1017 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 SNX2O60749 519 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 ZBED1O96006 694 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 FSD1LQ9BXM9 530 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 NEUROG2Q9H2A3 272 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 EPS15L1Q9UBC2 864 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 AFF4Q9UHB7 1163 aaKnown RBP14.15□□□□□ -0.14
COL6A3-212ENST00000491769 CLCA2Q9UQC9 943 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 PRKAB2O43741 272 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 ECE2O60344 883 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 PFKFB2O60825 505 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 PHKA2P46019 1235 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 TRIP13Q15645 432 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-212ENST00000491769 TRPC7Q9HCX4 862 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 KBTBD13C9JR72 458 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 TNPO2O14787 897 aaKnown RBP14.15□□□□□ -0.14
COL6A3-212ENST00000491769 PYGLP06737 847 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 CRKP46108 304 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 ZNF394Q53GI3 561 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 ZNF667Q5HYK9 610 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 SYNE4Q8N205 404 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 ZNF668Q96K58 619 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-212ENST00000491769 MAGEF1Q9HAY2 307 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 NGRNQ9NPE2 291 aaKnown RBP14.15□□□□□ -0.14
COL6A3-212ENST00000491769 TTI1O43156 1089 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 PAMP19021 973 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 CCDC157Q569K6 752 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 PARD3Q8TEW0 1356 aa14.15□□□□□ -0.14
COL6A3-212ENST00000491769 KCNA1Q09470 495 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms