RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CAP1Q01518 475 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 TUSC3Q13454 348 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 GPR19Q15760 415 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 PAN2Q504Q3 1202 aaKnown RBP3.17□□□□□ -1.9
HMGB1-208ENST00000490788 TAF7LQ5H9L4 462 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 TEPPQ6URK8 271 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 ARHGAP36Q6ZRI8 547 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 KCTD1Q719H9 257 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 C16orf59Q7L2K0 433 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 STK32CQ86UX6 486 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 FAM124AQ86V42 546 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 HOMER1Q86YM7 354 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 LILRB2Q8N423 598 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 FAM26EQ8N5C1 309 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 WDR48Q8TAF3 677 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 UHMK1Q8TAS1 419 aaKnown RBP3.17□□□□□ -1.9
HMGB1-208ENST00000490788 SH3TC2Q8TF17 1288 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 KISS1RQ969F8 398 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-208ENST00000490788 RELTQ969Z4 430 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 C20orf173Q96LM9 149 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 GORASP1Q9BQQ3 440 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 C11orf84Q9BUA3 381 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-208ENST00000490788 L2HGDHQ9H9P8 463 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 SLC52A2Q9HAB3 445 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 EPB41L4AQ9HCS5 686 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-208ENST00000490788 RIC8BQ9NVN3 520 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 CROTQ9UKG9 612 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 ATP23Q9Y6H3 246 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 TSPOAP1O95153 1857 aa3.17□□□□□ -1.9
HMGB1-208ENST00000490788 ABCC10Q5T3U5 1492 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 CCDC66A2RUB6 948 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 ARVCFO00192 962 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 PLD2O14939 933 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 NKRFO15226 690 aaKnown RBP eCLIP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 OPA1O60313 960 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 HIP1RO75146 1068 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 PLA2G1BP04054 148 aaKnown RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 CYP1A1P04798 512 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 ENO2P09104 434 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 C6orf222P0C671 652 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 PDE6AP16499 860 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 GJA4P35212 333 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 ITGA1P56199 1179 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 HTRA3P83110 453 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 TCEA2Q15560 299 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 BTBD8Q5XKL5 378 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 TMC5Q6UXY8 1006 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 UBE2R2Q712K3 238 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 BRAPQ7Z569 592 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 DDX53Q86TM3 631 aaKnown RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 SAPCD2Q86UD0 394 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 RBM12BQ8IXT5 1001 aaKnown RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 CARFQ8N187 725 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 SYNPOQ8N3V7 929 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 LINC00482Q8N8I6 264 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 MARCH10Q8NA82 808 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 TTLL11Q8NHH1 800 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 PCDH19Q8TAB3 1148 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 ZNF526Q8TF50 670 aaPredicted RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 ZSWIM3Q96MP5 696 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 NOX5Q96PH1 765 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 CD244Q9BZW8 370 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 CDIP1Q9H305 208 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 NCOA5Q9HCD5 579 aaKnown RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 PARD6AQ9NPB6 346 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 LUC7LQ9NQ29 371 aaKnown RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 ARHGAP28Q9P2N2 729 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 PCF11O94913 1555 aaKnown RBP3.16□□□□□ -1.9
HMGB1-208ENST00000490788 IFT140Q96RY7 1462 aa3.16□□□□□ -1.9
HMGB1-208ENST00000490788 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 SH3D21A4FU49 640 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 PRAMEF25A6NGN4 478 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 FFAR3O14843 346 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 TRIM13O60858 407 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 RASGRP1O95267 797 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 RAPGEF3O95398 923 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 NPTXRO95502 500 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 ASMTLO95671 621 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 LRG1P02750 347 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 LTFP02788 710 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 FAHP16930 419 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 RPL13P26373 211 aaKnown RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 THBS2P35442 1172 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 IGFALSP35858 605 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 SLURP1P55000 103 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 KIAA2012Q0VF49 1180 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 CR1LQ2VPA4 569 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 FNDC3BQ53EP0 1204 aaKnown RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 TRIM61Q5EBN2 209 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 FIGNQ5HY92 759 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 TRMT10BQ6PF06 316 aaKnown RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 BORAQ6PGQ7 559 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 LIPIQ6XZB0 460 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 OSTM1Q86WC4 334 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 PTRH1Q86Y79 214 aaKnown RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 ZDHHC14Q8IZN3 488 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 ADGRG2Q8IZP9 1017 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 CISD2Q8N5K1 135 aaKnown RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 C2orf69Q8N8R5 385 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 JMYQ8N9B5 988 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms