RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 ERVK-5Q9HDB9 667 aa17.74■□□□□ 0.43
UFD1-209ENST00000489406 HOXD8P13378 290 aaPredicted RBP17.73■□□□□ 0.43
UFD1-209ENST00000489406 HOXB8P17481 243 aaPredicted RBP17.73■□□□□ 0.43
UFD1-209ENST00000489406 HOXC8P31273 242 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 STXBP2Q15833 593 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 FAM26DQ5JW98 314 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 GIMAP6Q6P9H5 292 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 ERC1Q8IUD2 1116 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 SIX5Q8N196 739 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 TAAR1Q96RJ0 339 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 C16orf70Q9BSU1 422 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 CDV3Q9UKY7 258 aaKnown RBP17.73■□□□□ 0.43
UFD1-209ENST00000489406 MRVI1Q9Y6F6 885 aa17.73■□□□□ 0.43
UFD1-209ENST00000489406 TTC3P53804 2025 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 STK25O00506 426 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 HSDL1Q3SXM5 330 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 CES5AQ6NT32 575 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 ZDHHC14Q8IZN3 488 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 TDRD5Q8NAT2 981 aaKnown RBP17.72■□□□□ 0.43
UFD1-209ENST00000489406 SUMF1Q8NBK3 374 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 SPATA33Q96N06 139 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 FBXL21Q9UKT6 434 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 MYH7BA7E2Y1 1941 aa17.72■□□□□ 0.43
UFD1-209ENST00000489406 CHRNA1P02708 482 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 SP9P0CG40 484 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 TDO2P48775 406 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 UBE3AQ05086 875 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 BTNL9Q6UXG8 535 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 TMEM57Q8N5G2 664 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 TBC1D5Q92609 795 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 NECTIN4Q96NY8 510 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 EPB41L4AQ9HCS5 686 aaPredicted RBP17.71■□□□□ 0.43
UFD1-209ENST00000489406 SETD4Q9NVD3 440 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 NCDNQ9UBB6 729 aa17.71■□□□□ 0.43
UFD1-209ENST00000489406 SETXQ7Z333 2677 aaKnown RBP17.71■□□□□ 0.43
UFD1-209ENST00000489406 KIAA1217Q5T5P2 1943 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 H3BRB1 525 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 IPO8O15397 1037 aaKnown RBP17.7■□□□□ 0.42
UFD1-209ENST00000489406 NMT2O60551 498 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 WEE2P0C1S8 567 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 GATMP50440 423 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 LPIN1Q14693 890 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 MYSM1Q5VVJ2 828 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 PLPP4Q5VZY2 271 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 CRIPAKQ8N1N5 446 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 NSUN6Q8TEA1 469 aaKnown RBP17.7■□□□□ 0.42
UFD1-209ENST00000489406 DCAF4Q8WV16 495 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 FRAT1Q92837 279 aaPredicted RBP17.7■□□□□ 0.42
UFD1-209ENST00000489406 RTKNQ9BST9 563 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 TUT1Q9H6E5 874 aaKnown RBP17.7■□□□□ 0.42
UFD1-209ENST00000489406 EHMT1Q9H9B1 1298 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 GPCPD1Q9NPB8 672 aa17.7■□□□□ 0.42
UFD1-209ENST00000489406 FRMPD2Q68DX3 1309 aaPredicted RBP17.7■□□□□ 0.42
UFD1-209ENST00000489406 IFIT2P09913 472 aaKnown RBP17.69■□□□□ 0.42
UFD1-209ENST00000489406 APOBRQ0VD83 1088 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 TPRNQ4KMQ1 711 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 SPOUT1Q5T280 376 aaKnown RBP17.69■□□□□ 0.42
UFD1-209ENST00000489406 ZSCAN25Q6NSZ9 544 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 TRMT2AQ8IZ69 625 aaKnown RBP17.69■□□□□ 0.42
UFD1-209ENST00000489406 RHPN1Q8TCX5 695 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 RASGRP4Q8TDF6 673 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 LINC01599Q8WXQ3 324 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 ADAM7Q9H2U9 754 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 COL20A1Q9P218 1284 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 PNMA2Q9UL42 364 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 SUPT16HQ9Y5B9 1047 aaKnown RBP17.69■□□□□ 0.42
UFD1-209ENST00000489406 PCDHB12Q9Y5F1 795 aa17.69■□□□□ 0.42
UFD1-209ENST00000489406 PRR5-ARHGAP8B1AHC4 643 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 FSCN2O14926 492 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 FGF18O76093 207 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 APPP05067 770 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 ARHGAP8P85298 464 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 DMWDQ09019 674 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 USH1GQ495M9 461 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 PPP4R3BQ5MIZ7 849 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 VARS2Q5ST30 1063 aaKnown RBP17.68■□□□□ 0.42
UFD1-209ENST00000489406 PDE12Q6L8Q7 609 aaKnown RBP17.68■□□□□ 0.42
UFD1-209ENST00000489406 NPAS4Q8IUM7 802 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 CLASRPQ8N2M8 674 aaKnown RBP17.68■□□□□ 0.42
UFD1-209ENST00000489406 PLCD3Q8N3E9 789 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 SYTL5Q8TDW5 730 aaPredicted RBP17.68■□□□□ 0.42
UFD1-209ENST00000489406 IWS1Q96ST2 819 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 RMDN3Q96TC7 470 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 IL17RBQ9NRM6 502 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 RNF216Q9NWF9 866 aaPredicted RBP17.68■□□□□ 0.42
UFD1-209ENST00000489406 TMEM260Q9NX78 707 aa17.68■□□□□ 0.42
UFD1-209ENST00000489406 EIF3JO75822 258 aaKnown RBP17.67■□□□□ 0.42
UFD1-209ENST00000489406 GGPS1O95749 300 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 GNAT1P11488 350 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 MTHFRP42898 656 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 ITIH3Q06033 890 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 TDGQ13569 410 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 SPECC1Q5M775 1068 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 CELF3Q5SZQ8 465 aaKnown RBP17.67■□□□□ 0.42
UFD1-209ENST00000489406 RTN4RL1Q86UN2 441 aaPredicted RBP17.67■□□□□ 0.42
UFD1-209ENST00000489406 GPR161Q8N6U8 529 aaKnown RBP17.67■□□□□ 0.42
UFD1-209ENST00000489406 RGS22Q8NE09 1264 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 ZFYVE26Q68DK2 2539 aa17.67■□□□□ 0.42
UFD1-209ENST00000489406 MYH7P12883 1935 aa17.66■□□□□ 0.42
UFD1-209ENST00000489406 FANCMQ8IYD8 2048 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms