RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 DDX20Q9UHI6 824 aaKnown RBP11.66□□□□□ -0.54
SKA1-204ENST00000488454 DDX41Q9UJV9 622 aaKnown RBP11.66□□□□□ -0.54
SKA1-204ENST00000488454 ATP6V1DQ9Y5K8 247 aa11.66□□□□□ -0.54
SKA1-204ENST00000488454 SMAPO00193 183 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 DYNC1LI2O43237 492 aaPredicted RBP11.65□□□□□ -0.54
SKA1-204ENST00000488454 NEMFO60524 1076 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 DUSP11O75319 330 aaKnown RBP11.65□□□□□ -0.54
SKA1-204ENST00000488454 RGS20O76081 388 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 F13A1P00488 732 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 GH1P01241 217 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 ARP10275 920 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 SMPD1P17405 629 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 RESTQ13127 1097 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 ORC2Q13416 577 aaPredicted RBP11.65□□□□□ -0.54
SKA1-204ENST00000488454 LAMC2Q13753 1193 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 MTFR1Q15390 333 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 BRDTQ58F21 947 aaPredicted RBP11.65□□□□□ -0.54
SKA1-204ENST00000488454 COL13A1Q5TAT6 717 aaPredicted RBP11.65□□□□□ -0.54
SKA1-204ENST00000488454 MYSM1Q5VVJ2 828 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 ANO1Q5XXA6 986 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 CCDC62Q6P9F0 684 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 ZNF396Q96N95 335 aaPredicted RBP11.65□□□□□ -0.54
SKA1-204ENST00000488454 SENP7Q9BQF6 1050 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 AGO4Q9HCK5 861 aaKnown RBP11.65□□□□□ -0.54
SKA1-204ENST00000488454 TBC1D22BQ9NU19 505 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 PKD2L1Q9P0L9 805 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 CEP131Q9UPN4 1083 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 Q9Y3F1 56 aa11.65□□□□□ -0.54
SKA1-204ENST00000488454 IGLV3-22A0A075B6J6 115 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.64□□□□□ -0.55
SKA1-204ENST00000488454 IPO5O00410 1097 aaKnown RBP11.64□□□□□ -0.55
SKA1-204ENST00000488454 EDIL3O43854 480 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 BRD1O95696 1058 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 GGPS1O95749 300 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 BMP15O95972 392 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 TFRCP02786 760 aaKnown RBP11.64□□□□□ -0.55
SKA1-204ENST00000488454 PKP1Q13835 747 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 CALCRLQ16602 461 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 SLFN12Q8IYM2 578 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 OR6J1Q8NGC5 347 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 TATDN2Q93075 761 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 ZFRQ96KR1 1074 aaKnown RBP11.64□□□□□ -0.55
SKA1-204ENST00000488454 FAM20AQ96MK3 541 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 MBOAT7Q96N66 472 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 DEFB118Q96PH6 123 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 XPNPEP3Q9NQH7 507 aa11.64□□□□□ -0.55
SKA1-204ENST00000488454 NOP56O00567 594 aaKnown RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 TBX3O15119 743 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 MSH4O15457 936 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 SLC37A4O43826 429 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 ZEB2O60315 1214 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 GAS7O60861 476 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 ATP9AO75110 1047 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 ARIH2O95376 493 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 GJB1P08034 283 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 CAPN2P17655 700 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 UBA1P22314 1058 aaKnown RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 TOB1P50616 345 aaPredicted RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 SP2Q02086 613 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 SEMA3FQ13275 785 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 FOXD4L6Q3SYB3 417 aaPredicted RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 CELF3Q5SZQ8 465 aaKnown RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 METTL7BQ6UX53 244 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 FOXD4L3Q6VB84 417 aaPredicted RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 THSD4Q6ZMP0 1018 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 CYFIP1Q7L576 1253 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 RNF180Q86T96 592 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 TLK2Q86UE8 772 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 TNS4Q8IZW8 715 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 ARRDC4Q8NCT1 418 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 COPS5Q92905 334 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 SPATA33Q96N06 139 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 UIMC1Q96RL1 719 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 TEKT3Q9BXF9 490 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 PAK6Q9NQU5 681 aaPredicted RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 CHMP5Q9NZZ3 219 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 CFAP45Q9UL16 551 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 GNEQ9Y223 722 aaKnown RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 PCDHB6Q9Y5E3 794 aa11.63□□□□□ -0.55
SKA1-204ENST00000488454 RBBP6Q7Z6E9 1792 aaKnown RBP11.63□□□□□ -0.55
SKA1-204ENST00000488454 NFASCO94856 1347 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 PLXNA1Q9UIW2 1896 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 DDX39AO00148 427 aaKnown RBP11.62□□□□□ -0.55
SKA1-204ENST00000488454 LAD1O00515 517 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 GPR37O15354 613 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 SORBS3O60504 671 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 SGPL1O95470 568 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 PGK1P00558 417 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 C6orf222P0C671 652 aaPredicted RBP11.62□□□□□ -0.55
SKA1-204ENST00000488454 KCNA2P16389 499 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 TXKP42681 527 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 CPT1AP50416 773 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 SP4Q02446 784 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 GNASQ5JWF2 1037 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 TMEM63BQ5T3F8 832 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 GJC2Q5T442 439 aaPredicted RBP11.62□□□□□ -0.55
SKA1-204ENST00000488454 LRCH2Q5VUJ6 765 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 ATL3Q6DD88 541 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 FAM173BQ6P4H8 233 aa11.62□□□□□ -0.55
SKA1-204ENST00000488454 NUDT18Q6ZVK8 323 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms