RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ESR1P03372 595 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 PDE6AP16499 860 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 ATF3P18847 181 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 CCND1P24385 295 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 GTF2A2P52657 109 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 ARHGAP44Q17R89 818 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 MPZL3Q6UWV2 235 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 CEP68Q76N32 757 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 OSTM1Q86WC4 334 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 CCAR1Q8IX12 1150 aaKnown RBP5.28□□□□□ -1.56
PTCD3-216ENST00000487043 TMEM52Q8NDY8 209 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 PANK1Q8TE04 598 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 DPF3Q92784 378 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 TRMT2BQ96GJ1 504 aaKnown RBP5.28□□□□□ -1.56
PTCD3-216ENST00000487043 LIN37Q96GY3 246 aaPredicted RBP5.28□□□□□ -1.56
PTCD3-216ENST00000487043 TMEM169Q96HH4 297 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 AHCYL2Q96HN2 611 aaKnown RBP5.28□□□□□ -1.56
PTCD3-216ENST00000487043 RTFDC1Q9BY42 306 aaPredicted RBP5.28□□□□□ -1.56
PTCD3-216ENST00000487043 CDIP1Q9H305 208 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 GULP1Q9UBP9 304 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 ZNF180Q9UJW8 692 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 SPEF1Q9Y4P9 236 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 CEP162Q5TB80 1403 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 ADAMTS12P58397 1594 aa5.28□□□□□ -1.56
PTCD3-216ENST00000487043 PITPNM2Q9BZ72 1349 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 SYNJ2O15056 1496 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 WTIPA6NIX2 430 aaPredicted RBP5.27□□□□□ -1.57
PTCD3-216ENST00000487043 KIF3BO15066 747 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 MT-CO1P00395 513 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 GNAT1P11488 350 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 COL6A2P12110 1019 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 FPR2P25090 351 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 IARSP41252 1262 aaKnown RBP5.27□□□□□ -1.57
PTCD3-216ENST00000487043 AFMP43652 599 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 JAM2P57087 298 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 LACTBP83111 547 aaPredicted RBP5.27□□□□□ -1.57
PTCD3-216ENST00000487043 FAPQ12884 760 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 DDB1Q16531 1140 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 HLA-DQA1Q5Y7H0 255 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 NLRP10Q86W26 655 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 TEX2Q8IWB9 1127 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 CLRN3Q8NCR9 226 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 ZSCAN18Q8TBC5 510 aaPredicted RBP5.27□□□□□ -1.57
PTCD3-216ENST00000487043 SLC5A5Q92911 643 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 FCRL2Q96LA5 508 aaPredicted RBP5.27□□□□□ -1.57
PTCD3-216ENST00000487043 PPP1R16BQ96T49 567 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 MENTQ9BUN1 341 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 CDH19Q9H159 772 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 MARCH2Q9P0N8 246 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 IP6K2Q9UHH9 426 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 CTNND2Q9UQB3 1225 aa5.27□□□□□ -1.57
PTCD3-216ENST00000487043 CLIP1P30622 1438 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 SLC12A8A0AV02 714 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 H7BY64 318 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 H7C1D1 291 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 ZNF561-AS1K7EIQ3 104 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 TGM5O43548 720 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 FUCA1P04066 466 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 ZSCAN20P17040 1043 aaPredicted RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 SLC9A1P19634 815 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 CFPP27918 469 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 GNALP38405 381 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 SESN3P58005 492 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 ERVK-21P61565 698 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 MLC1Q15049 377 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 BROXQ5VW32 411 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 CREB3L3Q68CJ9 461 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 ARHGAP36Q6ZRI8 547 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 SYDE1Q6ZW31 735 aaPredicted RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 PTRH1Q86Y79 214 aaKnown RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 CBARPQ8N350 705 aaPredicted RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 EFHBQ8N7U6 833 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 JPH3Q8WXH2 748 aaPredicted RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 RELTQ969Z4 430 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 SYTL4Q96C24 671 aaPredicted RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 FUBP3Q96I24 572 aaKnown RBP eCLIP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 BOCQ9BWV1 1114 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 KRTAP4-2Q9BYR5 136 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 SMURF1Q9HCE7 757 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 LUC7LQ9NQ29 371 aaKnown RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 C14orf119Q9NWQ9 140 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 LUC7L2Q9Y383 392 aaKnown RBP5.26□□□□□ -1.57
PTCD3-216ENST00000487043 GRIN2AQ12879 1464 aa5.26□□□□□ -1.57
PTCD3-216ENST00000487043 WASHC2AQ641Q2 1341 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 C22orf46C9J442 243 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 PPP1R11O60927 126 aaPredicted RBP5.25□□□□□ -1.57
PTCD3-216ENST00000487043 SNUPNO95149 360 aaKnown RBP5.25□□□□□ -1.57
PTCD3-216ENST00000487043 TSPAN15O95858 294 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 AMY2AP04746 511 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 GLI1P08151 1106 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 CT47B1P0C2W7 299 aaPredicted RBP5.25□□□□□ -1.57
PTCD3-216ENST00000487043 AMY2BP19961 511 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 IRF9Q00978 393 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 SPIRE1Q08AE8 756 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 KLF1Q13351 362 aaPredicted RBP5.25□□□□□ -1.57
PTCD3-216ENST00000487043 PCBP2Q15366 365 aaKnown RBP eCLIP5.25□□□□□ -1.57
PTCD3-216ENST00000487043 ZNF174Q15697 407 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 GPR19Q15760 415 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 FYB2Q5VWT5 728 aa5.25□□□□□ -1.57
PTCD3-216ENST00000487043 PGM2L1Q6PCE3 622 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms