RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TMEM94Q12767 1356 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 MED14O60244 1454 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 MXI1P50539 228 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 TFDP1Q14186 410 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 SYDE2Q5VT97 1194 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 SCYL3Q8IZE3 742 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 RNF169Q8NCN4 708 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 TXLNGQ9NUQ3 528 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 HECW2Q9P2P5 1572 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 USP27XA6NNY8 438 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 GYS2P54840 703 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 CCDC93Q567U6 631 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 C6orf118Q5T5N4 469 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 CEP72Q9P209 647 aa17.78■□□□□ 0.44
COL7A1-210ENST00000487017 ADGRL3Q9HAR2 1447 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 CDK8P49336 464 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 ADCY2Q08462 1091 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 ANKRD36BP1Q96IX9 119 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 PLAAQ9Y263 795 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 TRIM49BA6NDI0 452 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 RCAN1P53805 252 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 RCN2Q14257 317 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 PFKFB3Q16875 520 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-210ENST00000487017 DIS3Q9Y2L1 958 aaKnown RBP17.77■□□□□ 0.44
COL7A1-210ENST00000487017 FRMD3A2A2Y4 597 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 GDF11O95390 407 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 ABL1P00519 1130 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 KIF2CQ99661 725 aa17.77■□□□□ 0.44
COL7A1-210ENST00000487017 BSDC1Q9NW68 430 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-210ENST00000487017 MCF2LO15068 1137 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 WDR46O15213 610 aaKnown RBP17.77■□□□□ 0.43
COL7A1-210ENST00000487017 SRGAP2O75044 1071 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 PALMO75781 387 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 APBA3O96018 575 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 SAT1P21673 171 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 ABCD1P33897 745 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 ASPHQ12797 758 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 TBC1D10BQ4KMP7 808 aaPredicted RBP17.77■□□□□ 0.43
COL7A1-210ENST00000487017 SLC7A3Q8WY07 619 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 TBK1Q9UHD2 729 aa17.77■□□□□ 0.43
COL7A1-210ENST00000487017 SPDYE16A6NNV3 312 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-210ENST00000487017 CYP2E1P05181 493 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-210ENST00000487017 RFX1P22670 979 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 CASP1P29466 404 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 SPDYE2Q495Y8 402 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 RHOT2Q8IXI1 618 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 DDX27Q96GQ7 796 aaKnown RBP17.76■□□□□ 0.43
COL7A1-210ENST00000487017 CLTCL1P53675 1640 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 PRR29P0C7W0 189 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 STAT2P52630 851 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 IFRD2Q12894 506 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-210ENST00000487017 DHX36Q9H2U1 1008 aaKnown RBP17.76■□□□□ 0.43
COL7A1-210ENST00000487017 IFT122Q9HBG6 1241 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 LY9Q9HBG7 655 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 DNAJC24Q6P3W2 148 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 BANK1Q8NDB2 785 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 BBOX1O75936 387 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 FGGP02679 453 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 GSTA1P08263 222 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 GSTA2P09210 222 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 ALCAMQ13740 583 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 LLGL1Q15334 1064 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 RASIP1Q5U651 963 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 SUSD4Q5VX71 490 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 LRRC43Q8N309 656 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 CNKSR1Q969H4 720 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 CDC42BPGQ6DT37 1551 aa17.76■□□□□ 0.43
COL7A1-210ENST00000487017 CACYBPQ9HB71 228 aaKnown RBP17.76■□□□□ 0.43
COL7A1-210ENST00000487017 CPP00450 1065 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 PRCPP42785 496 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 ECE1P42892 770 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 CEP170P1Q96L14 293 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 TUBB6Q9BUF5 446 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 EXOC1LA0A1B0GW35 172 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 PEX19P40855 299 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 RBBP5Q15291 538 aaKnown RBP17.75■□□□□ 0.43
COL7A1-210ENST00000487017 TRIP13Q15645 432 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-210ENST00000487017 MMEL1Q495T6 779 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 GDAP1Q8TB36 358 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 OXER1Q8TDS5 423 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 DDIT3P35638 169 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 ITKQ08881 620 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 NCAPG2Q86XI2 1143 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 PROM2Q8N271 834 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 MT-ND3P03897 115 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 MIS18BP1Q6P0N0 1132 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 PPP1R9AQ9ULJ8 1098 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 ABCC3O15438 1527 aa17.75■□□□□ 0.43
COL7A1-210ENST00000487017 GOLGA8SH3BPF8 625 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 TLR3O15455 904 aaKnown RBP17.74■□□□□ 0.43
COL7A1-210ENST00000487017 PRPSAP1Q14558 356 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 PIGBQ92521 554 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 MTA3Q9BTC8 594 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 RWDD2BP57060 319 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 MRPS25P82663 173 aaKnown RBP17.74■□□□□ 0.43
COL7A1-210ENST00000487017 GOLGA8QA0A0J9YX86 632 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 GOLGA8OA6NCC3 632 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 GOLGA8NF8WBI6 632 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 ADGRG1Q9Y653 693 aa17.74■□□□□ 0.43
COL7A1-210ENST00000487017 LRRC53A6NM62 1247 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms