RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ZMYND8Q9ULU4 1186 aaPredicted RBP9.14□□□□□ -0.95
USP40-216ENST00000485943 PCDHA4Q9UN74 947 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.14□□□□□ -0.95
USP40-216ENST00000485943 KAT6AQ92794 2004 aa9.14□□□□□ -0.95
USP40-216ENST00000485943 ELP1O95163 1332 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 STK36Q9NRP7 1315 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 ESYT2A0FGR8 921 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 BACH1O14867 736 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 MAFGO15525 162 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 BAG4O95429 457 aaKnown RBP9.13□□□□□ -0.95
USP40-216ENST00000485943 SUPT20HL2P0C7V6 817 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 EDNRBP24530 442 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 KRT2P35908 639 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 RBM25P49756 843 aaKnown RBP9.13□□□□□ -0.95
USP40-216ENST00000485943 EVCP57679 992 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 ARHGAP4P98171 946 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 ITGA7Q13683 1181 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 NONOQ15233 471 aaKnown RBP eCLIP9.13□□□□□ -0.95
USP40-216ENST00000485943 QPCTQ16769 361 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 UTP14CQ5TAP6 766 aaKnown RBP9.13□□□□□ -0.95
USP40-216ENST00000485943 PRPF38BQ5VTL8 546 aaKnown RBP9.13□□□□□ -0.95
USP40-216ENST00000485943 TAPT1Q6NXT6 567 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 CYFIP1Q7L576 1253 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 KRT25Q7Z3Z0 450 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 VSIG10LQ86VR7 867 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 PLA2G4DQ86XP0 818 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 HSCBQ8IWL3 235 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 CKAP2LQ8IYA6 745 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 BLIDQ8IZY5 108 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 FAM177A1Q8N128 213 aaPredicted RBP9.13□□□□□ -0.95
USP40-216ENST00000485943 CCDC155Q8N6L0 562 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 MORC4Q8TE76 937 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 AFG1LQ8WV93 481 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 GLG1Q92896 1179 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 COPS5Q92905 334 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 GPRASP2Q96D09 838 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 C8orf76Q96K31 380 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 FGD4Q96M96 766 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 PHF24Q9UPV7 400 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 SMC3Q9UQE7 1217 aa9.13□□□□□ -0.95
USP40-216ENST00000485943 NID2Q14112 1375 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 LCTP09848 1927 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 BHMG1C9JSJ3 638 aaPredicted RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 DDX39AO00148 427 aaKnown RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 MEIS2O14770 477 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 HOXA2O43364 376 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 LILRB3O75022 631 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 ADAMTS4O75173 837 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 CLTBP09497 229 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 GNAT1P11488 350 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 SYN1P17600 705 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 CST5P28325 142 aaPredicted RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 COL9A3Q14050 684 aaPredicted RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 ME3Q16798 604 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 TRIM60Q495X7 471 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 MCTP1Q6DN14 999 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 RETREG2Q8NC44 543 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 BANK1Q8NDB2 785 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 PPTC7Q8NI37 304 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 CCDC43Q96MW1 224 aaKnown RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 MXRA8Q9BRK3 442 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 ZNF577Q9BSK1 485 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 ZMYND12Q9H0C1 365 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 UPF3AQ9H1J1 476 aaKnown RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 TMEM260Q9NX78 707 aa9.12□□□□□ -0.95
USP40-216ENST00000485943 DDX41Q9UJV9 622 aaKnown RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 NOL7Q9UMY1 257 aaKnown RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 GNEQ9Y223 722 aaKnown RBP9.12□□□□□ -0.95
USP40-216ENST00000485943 LRRC37A2A6NM11 1700 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 RBM47A0AV96 593 aaKnown RBP9.11□□□□□ -0.95
USP40-216ENST00000485943 MYADML2A6NDP7 307 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 ARVCFO00192 962 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 OPLAHO14841 1288 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 MMP3P08254 477 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 UBA1P22314 1058 aaKnown RBP9.11□□□□□ -0.95
USP40-216ENST00000485943 USP46P62068 366 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 GHRHRQ02643 423 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 LRRC26Q2I0M4 334 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 SLC35G1Q2M3R5 365 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 LETM2Q2VYF4 491 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 CEP55Q53EZ4 464 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 PRR16Q569H4 304 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 CELF3Q5SZQ8 465 aaKnown RBP9.11□□□□□ -0.95
USP40-216ENST00000485943 FAM160B1Q5W0V3 765 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 MIS18BP1Q6P0N0 1132 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 METTL7BQ6UX53 244 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 IL31RAQ8NI17 732 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 RASGRP4Q8TDF6 673 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 POM121Q96HA1 1249 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 TBC1D32Q96NH3 1257 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 HS3ST6Q96QI5 342 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 LLPHQ9BRT6 129 aaKnown RBP9.11□□□□□ -0.95
USP40-216ENST00000485943 BACH2Q9BYV9 841 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 MTIF3Q9H2K0 278 aaKnown RBP9.11□□□□□ -0.95
USP40-216ENST00000485943 JPH1Q9HDC5 661 aaPredicted RBP9.11□□□□□ -0.95
USP40-216ENST00000485943 JADE2Q9NQC1 790 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 SLC9A2Q9UBY0 812 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 KCNJ14Q9UNX9 436 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 PDE4DIPQ5VU43 2346 aa9.11□□□□□ -0.95
USP40-216ENST00000485943 ASTN1O14525 1302 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms