RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 PCDHA2Q9Y5H9 948 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 STAM2O75886 525 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 MYCLP12524 364 aaPredicted RBP15.65■□□□□ 0.1
CLK3-204ENST00000483723 MSNP26038 577 aaKnown RBP15.65■□□□□ 0.1
CLK3-204ENST00000483723 HERVK_113P62684 666 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 CYP4A11Q02928 519 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 SPAG1Q07617 926 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 COASYQ13057 564 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 GIT2Q14161 759 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 PLS1Q14651 629 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 MAP1SQ66K74 1059 aaPredicted RBP15.65■□□□□ 0.1
CLK3-204ENST00000483723 VSTM4Q8IW00 320 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 CCDC65Q8IXS2 484 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 NOC3LQ8WTT2 800 aaKnown RBP15.65■□□□□ 0.1
CLK3-204ENST00000483723 SLC10A4Q96EP9 437 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 INPP4AQ96PE3 977 aaPredicted RBP15.65■□□□□ 0.1
CLK3-204ENST00000483723 CTAGE1Q96RT6 745 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 SPATC1LQ9H0A9 340 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 SLC39A2Q9NP94 309 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 PANK4Q9NVE7 773 aa15.65■□□□□ 0.1
CLK3-204ENST00000483723 ADD3Q9UEY8 706 aaKnown RBP15.65■□□□□ 0.1
CLK3-204ENST00000483723 LOXHD1Q8IVV2 1947 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 BICDL2A1A5D9 508 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 IDEP14735 1019 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 GSDMDP57764 484 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 FKBP1BP68106 108 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 IRX3P78415 501 aaPredicted RBP15.64■□□□□ 0.09
CLK3-204ENST00000483723 PABPC4Q13310 644 aaKnown RBP eCLIP15.64■□□□□ 0.09
CLK3-204ENST00000483723 CTTNQ14247 550 aaKnown RBP15.64■□□□□ 0.09
CLK3-204ENST00000483723 TPD52L1Q16890 204 aaPredicted RBP15.64■□□□□ 0.09
CLK3-204ENST00000483723 HSP90AA4PQ58FG1 418 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 DNERQ8NFT8 737 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 CACTINQ8WUQ7 758 aaKnown RBP15.64■□□□□ 0.09
CLK3-204ENST00000483723 HPS3Q969F9 1004 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 NACC1Q96RE7 527 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 IWS1Q96ST2 819 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 THAP9Q9H5L6 903 aa15.64■□□□□ 0.09
CLK3-204ENST00000483723 TRIM49BA6NDI0 452 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 TRAF5O00463 557 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 ATP9AO75110 1047 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 COBLO75128 1261 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 SSBP05455 408 aaKnown RBP eCLIP15.63■□□□□ 0.09
CLK3-204ENST00000483723 CLCN1P35523 988 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 ANKRD40Q6AI12 368 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 TMC6Q7Z403 805 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 NLRX1Q86UT6 975 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 LRRC8AQ8IWT6 810 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 TPH2Q8IWU9 490 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 SEMA6BQ9H3T3 888 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 RBPJLQ9UBG7 517 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 KIAA1217Q5T5P2 1943 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 PFASO15067 1338 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 CHMP2AO43633 222 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 RGS20O76081 388 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 LYPLA2O95372 231 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 SLC25A27O95847 323 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 P4HBP07237 508 aaKnown RBP15.63■□□□□ 0.09
CLK3-204ENST00000483723 OSBPP22059 807 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 SNAPC2Q13487 334 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 TCP11X2Q5H9J9 407 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 FAM26FQ5R3K3 315 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 RINT1Q6NUQ1 792 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 C1orf186Q6ZWK4 172 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 MIER3Q7Z3K6 550 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 FILIP1Q7Z7B0 1213 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 SENP7Q9BQF6 1050 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 BHMT2Q9H2M3 363 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 RRAGCQ9HB90 399 aa15.63■□□□□ 0.09
CLK3-204ENST00000483723 RTN4Q9NQC3 1192 aaKnown RBP15.63■□□□□ 0.09
CLK3-204ENST00000483723 WRAP73Q9P2S5 460 aaPredicted RBP15.63■□□□□ 0.09
CLK3-204ENST00000483723 NPHP3-ACAD11A0A0J9YXS1 232 aa15.62■□□□□ 0.09
CLK3-204ENST00000483723 COPB2P35606 906 aa15.62■□□□□ 0.09
CLK3-204ENST00000483723 PBX1P40424 430 aa15.62■□□□□ 0.09
CLK3-204ENST00000483723 TBX2Q13207 712 aaPredicted RBP15.62■□□□□ 0.09
CLK3-204ENST00000483723 KRT31Q15323 416 aa15.62■□□□□ 0.09
CLK3-204ENST00000483723 RDM1Q8NG50 284 aa15.62■□□□□ 0.09
CLK3-204ENST00000483723 SRRTQ9BXP5 876 aaKnown RBP15.62■□□□□ 0.09
CLK3-204ENST00000483723 MOV10L1Q9BXT6 1211 aaKnown RBP15.62■□□□□ 0.09
CLK3-204ENST00000483723 KCNJ18B7U540 433 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 PEX10O60683 326 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 EEF1GP26641 437 aaKnown RBP15.61■□□□□ 0.09
CLK3-204ENST00000483723 KCNJ12Q14500 433 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 KIAA1524Q8TCG1 905 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 REEP2Q9BRK0 252 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 RUSC1Q9BVN2 902 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 ZSWIM4Q9H7M6 989 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 KCND2Q9NZV8 630 aa15.61■□□□□ 0.09
CLK3-204ENST00000483723 ASTN1O14525 1302 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 NFASCO94856 1347 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 TESPA1A2RU30 521 aaPredicted RBP15.6■□□□□ 0.09
CLK3-204ENST00000483723 SPATA31C2B4DYI2 1134 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 DDX39AO00148 427 aaKnown RBP15.6■□□□□ 0.09
CLK3-204ENST00000483723 KCNA2P16389 499 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 SFNP31947 248 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 ICAM3P32942 547 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 COPB1P53618 953 aaKnown RBP15.6■□□□□ 0.09
CLK3-204ENST00000483723 KRT76Q01546 638 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 LRMPQ12912 555 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 ARID5BQ14865 1188 aa15.6■□□□□ 0.09
CLK3-204ENST00000483723 HERC4Q5GLZ8 1057 aaPredicted RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms