RNA–Protein interactions for RNA: ENST00000482507.5

ATG4B-220, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4B, Length 2,414 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-220ENST00000482507 ZNF713Q8N859 430 aaPredicted RBP16.44■□□□□ 0.22
ATG4B-220ENST00000482507 RIC8AQ9NPQ8 531 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 TMEM51Q9NW97 253 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 TBC1D7Q9P0N9 293 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 FER1L6Q2WGJ9 1857 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 FZD9O00144 591 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 SLC7A5Q01650 507 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 ZNF543Q08ER8 600 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 LEKR1Q6ZMV7 388 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 TLR10Q9BXR5 811 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 NLRC4Q9NPP4 1024 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 FEZ2Q9UHY8 353 aaPredicted RBP16.44■□□□□ 0.22
ATG4B-220ENST00000482507 SERPINA10Q9UK55 444 aa16.44■□□□□ 0.22
ATG4B-220ENST00000482507 MYH10P35580 1976 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 CLRN2A0PK11 232 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 PJA2O43164 708 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 PRLRP16471 622 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 LMNB1P20700 586 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 MATR3P43243 847 aaKnown RBP eCLIP16.43■□□□□ 0.225e-10■■□□□ 12.9
ATG4B-220ENST00000482507 PPP4R3AQ6IN85 833 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 DDX25Q9UHL0 483 aaKnown RBP16.43■□□□□ 0.22
ATG4B-220ENST00000482507 PNMA6FA0A0J9YX94 578 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 NPHP3-ACAD11A0A0J9YXS1 232 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 TRIM66O15016 1216 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 BUB1O43683 1085 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 CACNB1Q02641 598 aaPredicted RBP16.43■□□□□ 0.22
ATG4B-220ENST00000482507 MYOCDQ8IZQ8 938 aa16.43■□□□□ 0.22
ATG4B-220ENST00000482507 ADAMTSL1Q8N6G6 1762 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 USP17L10C9JJH3 530 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 E9PMD0 336 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 FGFR1OPO95684 399 aaKnown RBP16.42■□□□□ 0.22
ATG4B-220ENST00000482507 GMPSP49915 693 aaPredicted RBP16.42■□□□□ 0.22
ATG4B-220ENST00000482507 PSMD2Q13200 908 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 MAPK8IP2Q13387 824 aaPredicted RBP16.42■□□□□ 0.22
ATG4B-220ENST00000482507 KLHDC7AQ5VTJ3 777 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 AFAP1L1Q8TED9 768 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 RAB34Q9BZG1 259 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 TANGO6Q9C0B7 1094 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 PLEKHA4Q9H4M7 779 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 RNF181Q9P0P0 153 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 HYOU1Q9Y4L1 999 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 PCDHA2Q9Y5H9 948 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 FOCADQ5VW36 1801 aa16.42■□□□□ 0.22
ATG4B-220ENST00000482507 ITIH3Q06033 890 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 TNIP1Q15025 636 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 NBPF9Q3BBW0 867 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 SAMD7Q7Z3H4 446 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 SRLQ86TD4 932 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 MS4A14Q96JA4 679 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 CRACR2AQ9BSW2 395 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 PANK4Q9NVE7 773 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 FAM184BQ9ULE4 1060 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 COL4A3BPQ9Y5P4 624 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 MYO1CO00159 1063 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 TRAF5O00463 557 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 SSBP05455 408 aaKnown RBP eCLIP16.41■□□□□ 0.22
ATG4B-220ENST00000482507 DLGAP5Q15398 846 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 FAM26FQ5R3K3 315 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 HAUS3Q68CZ6 603 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 IQCEQ6IPM2 695 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 KCTD1Q719H9 257 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 CACNA2D4Q7Z3S7 1137 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 NELFCDQ8IXH7 590 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 AGBL3Q8NEM8 1001 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 TSG101Q99816 390 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 MRIQ9BWK5 157 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 CWC15Q9P013 229 aaKnown RBP16.41■□□□□ 0.22
ATG4B-220ENST00000482507 MYH7BA7E2Y1 1941 aa16.41■□□□□ 0.22
ATG4B-220ENST00000482507 SHMT1P34896 483 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 FKBP3Q00688 224 aaKnown RBP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 FAM83BQ5T0W9 1011 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 SND1Q7KZF4 910 aaKnown RBP eCLIP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 RBM12Q9NTZ6 932 aaKnown RBP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 RRP15Q9Y3B9 282 aaKnown RBP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 MYO3BQ8WXR4 1341 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 SSU72P8A0A1W2PR75 194 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 SPDYE2BA6NHP3 402 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 TCP10L2B9ZVM9 353 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 RBAK-RBAKDNI3L0D1 243 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 TTLL1O95922 423 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 SPDYE6P0CI01 402 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 TCP1P17987 556 aaKnown RBP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 HDLBPQ00341 1268 aaKnown RBP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 CCDC40Q4G0X9 1142 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 TDRD12Q587J7 1177 aaKnown RBP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 ALS2CR12Q96Q35 445 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 LSM14BQ9BX40 385 aaKnown RBP16.4■□□□□ 0.22
ATG4B-220ENST00000482507 HDAC9Q9UKV0 1011 aa16.4■□□□□ 0.22
ATG4B-220ENST00000482507 USP17L15C9J2P7 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L13C9JLJ4 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L11C9JVI0 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L18D6R9N7 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L22D6RA61 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L17D6RBQ6 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L19D6RCP7 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L20D6RJB6 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 DDNO94850 711 aaPredicted RBP16.39■□□□□ 0.21
ATG4B-220ENST00000482507 USP17L24Q0WX57 530 aa16.39■□□□□ 0.21
ATG4B-220ENST00000482507 TBC1D10BQ4KMP7 808 aaPredicted RBP16.39■□□□□ 0.21
ATG4B-220ENST00000482507 C9orf131Q5VYM1 1079 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms