RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 MICALL1Q8N3F8 863 aa11.98□□□□□ -0.49
CPSF4-212ENST00000482251 LMBR1Q8WVP7 490 aa11.98□□□□□ -0.49
CPSF4-212ENST00000482251 CDHR1Q96JP9 859 aa11.98□□□□□ -0.49
CPSF4-212ENST00000482251 SENP7Q9BQF6 1050 aa11.98□□□□□ -0.49
CPSF4-212ENST00000482251 LARP6Q9BRS8 491 aaKnown RBP11.98□□□□□ -0.49
CPSF4-212ENST00000482251 RNPEPQ9H4A4 650 aa11.98□□□□□ -0.49
CPSF4-212ENST00000482251 NCOA5Q9HCD5 579 aaKnown RBP11.98□□□□□ -0.49
CPSF4-212ENST00000482251 JADE2Q9NQC1 790 aa11.98□□□□□ -0.49
CPSF4-212ENST00000482251 COL4A4P53420 1690 aaPredicted RBP11.97□□□□□ -0.49
CPSF4-212ENST00000482251 NID2Q14112 1375 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 DDX39AO00148 427 aaKnown RBP11.97□□□□□ -0.49
CPSF4-212ENST00000482251 BAIAP3O94812 1187 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 SCG2P13521 617 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 HOXC8P31273 242 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 RCAN1P53805 252 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 CCDC85BQ15834 202 aaPredicted RBP11.97□□□□□ -0.49
CPSF4-212ENST00000482251 PFKFB3Q16875 520 aaPredicted RBP11.97□□□□□ -0.49
CPSF4-212ENST00000482251 FAM117BQ6P1L5 589 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 GIMAP8Q8ND71 665 aaPredicted RBP11.97□□□□□ -0.49
CPSF4-212ENST00000482251 RASGRP4Q8TDF6 673 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 GLG1Q92896 1179 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 ZBTB10Q96DT7 871 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 MXRA8Q9BRK3 442 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 OSBPL7Q9BZF2 842 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 UPF3BQ9BZI7 483 aaKnown RBP11.97□□□□□ -0.49
CPSF4-212ENST00000482251 JPH1Q9HDC5 661 aaPredicted RBP11.97□□□□□ -0.49
CPSF4-212ENST00000482251 PRDM6Q9NQX0 595 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 KCNH7Q9NS40 1196 aa11.97□□□□□ -0.49
CPSF4-212ENST00000482251 SIP14410 1827 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 VCANP13611 3396 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 CCDC196A0A1B0GTZ2 297 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 GSTTP1A0A1W2PQM5 241 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 LCHNA4D1U4 455 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 RSPH10B2B2RC85 870 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 hCG_1984214I3L0E3 225 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 RFXAPO00287 272 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 TLL1O43897 1013 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 CXCL10P02778 98 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 RSPH10BP0C881 870 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 ARP10275 920 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 PSMA5P28066 241 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 CLK2P49760 499 aaKnown RBP11.96□□□□□ -0.49
CPSF4-212ENST00000482251 IGBP1P78318 339 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 PPFIA1Q13136 1202 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 RUFY4Q6ZNE9 571 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 ZNF713Q8N859 430 aaPredicted RBP11.96□□□□□ -0.49
CPSF4-212ENST00000482251 SEPT1Q8WYJ6 367 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 SLC26A6Q9BXS9 759 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 SLC9A2Q9UBY0 812 aa11.96□□□□□ -0.49
CPSF4-212ENST00000482251 MYO9BQ13459 2157 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 MICAL3Q7RTP6 2002 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 EPOPA6NHQ4 379 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 LGR5O75473 907 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 ZNF76P36508 570 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 SREBF1P36956 1147 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 AKAP17AQ02040 695 aaKnown RBP11.95□□□□□ -0.5
CPSF4-212ENST00000482251 STK3Q13188 491 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 ITGB3BPQ13352 177 aaPredicted RBP11.95□□□□□ -0.5
CPSF4-212ENST00000482251 AP3B2Q13367 1082 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 TOB2Q14106 344 aaPredicted RBP11.95□□□□□ -0.5
CPSF4-212ENST00000482251 GRIK4Q16099 956 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 PKN1Q16512 942 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 CEP55Q53EZ4 464 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.95□□□□□ -0.5
CPSF4-212ENST00000482251 RUFY3Q7L099 469 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 DBF4BQ8NFT6 615 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 ARNTL2Q8WYA1 636 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 SDF4Q9BRK5 362 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 ZBED2Q9BTP6 218 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 AGXT2Q9BYV1 514 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 AGO4Q9HCK5 861 aaKnown RBP11.95□□□□□ -0.5
CPSF4-212ENST00000482251 VPS54Q9P1Q0 977 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 MTUS1Q9ULD2 1270 aa11.95□□□□□ -0.5
CPSF4-212ENST00000482251 EMSYQ7Z589 1322 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 KIF28PB7ZC32 967 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 FAM86B1E9PN63 330 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 PARNO95453 639 aaKnown RBP11.94□□□□□ -0.5
CPSF4-212ENST00000482251 FOSP01100 380 aaPredicted RBP11.94□□□□□ -0.5
CPSF4-212ENST00000482251 FAM86B2P0C5J1 330 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 GNAT1P11488 350 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 PDIA3P30101 505 aaKnown RBP11.94□□□□□ -0.5
CPSF4-212ENST00000482251 ACTR2P61160 394 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 TAP1Q03518 808 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 IKBKEQ14164 716 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 KRT40Q6A162 431 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 MYOCDQ8IZQ8 938 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 REXO1Q8N1G1 1221 aaKnown RBP11.94□□□□□ -0.5
CPSF4-212ENST00000482251 PHOSPHO2Q8TCD6 241 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 TRAPPC12Q8WVT3 735 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 PCYT2Q99447 389 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 COL25A1Q9BXS0 654 aaPredicted RBP11.94□□□□□ -0.5
CPSF4-212ENST00000482251 ZSWIM6Q9HCJ5 1215 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 PPP4R2Q9NY27 417 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 ERAP1Q9NZ08 941 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 TUBE1Q9UJT0 475 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 TRPC6Q9Y210 931 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 CYP46A1Q9Y6A2 500 aa11.94□□□□□ -0.5
CPSF4-212ENST00000482251 NRCAMQ92823 1304 aa11.93□□□□□ -0.5
CPSF4-212ENST00000482251 ABHD14A-ACY1A0A1B0GW23 586 aa11.93□□□□□ -0.5
CPSF4-212ENST00000482251 PRPF3O43395 683 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms