RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 LCE3BQ5TA77 95 aa6.85□□□□□ -1.31
VPS50-214ENST00000477935 STYK1Q6J9G0 422 aa6.85□□□□□ -1.31
VPS50-214ENST00000477935 AP5M1Q9H0R1 490 aa6.85□□□□□ -1.31
VPS50-214ENST00000477935 CLDND1Q9NY35 253 aa6.85□□□□□ -1.31
VPS50-214ENST00000477935 COA3Q9Y2R0 106 aaPredicted RBP6.85□□□□□ -1.31
VPS50-214ENST00000477935 LRP6O75581 1613 aa6.85□□□□□ -1.31
VPS50-214ENST00000477935 RGS12O14924 1447 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 CDC42BPBQ9Y5S2 1711 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 ITSN2Q9NZM3 1697 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 TRBV23-1A0A0A0MS06 115 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 SGSM2O43147 1006 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 ASGR2P07307 311 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 NCAM1P13591 858 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 PI3P19957 117 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 IGFBP6P24592 240 aaPredicted RBP6.84□□□□□ -1.31
VPS50-214ENST00000477935 YY1P25490 414 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 BMS1Q14692 1282 aaKnown RBP6.84□□□□□ -1.31
VPS50-214ENST00000477935 TARBP2Q15633 366 aaKnown RBP6.84□□□□□ -1.31
VPS50-214ENST00000477935 CIAPIN1Q6FI81 312 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 C1QL4Q86Z23 238 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 LRRC56Q8IYG6 542 aaPredicted RBP6.84□□□□□ -1.31
VPS50-214ENST00000477935 TMEFF1Q8IYR6 380 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 SEC14L1Q92503 715 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 EXOC2Q96KP1 924 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 RNF38Q9H0F5 515 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 CDIP1Q9H305 208 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 EPB41L4AQ9HCS5 686 aaPredicted RBP6.84□□□□□ -1.31
VPS50-214ENST00000477935 KCTD3Q9Y597 815 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 ABCC3O15438 1527 aa6.84□□□□□ -1.31
VPS50-214ENST00000477935 ARID1BQ8NFD5 2236 aaPredicted RBP6.84□□□□□ -1.32
VPS50-214ENST00000477935 NUAK1O60285 661 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 PMLP29590 882 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 MC3RP41968 323 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 SUMO1P63165 101 aaKnown RBP6.83□□□□□ -1.32
VPS50-214ENST00000477935 NFE2L2Q16236 605 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 ZNF385BQ569K4 471 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 LBX2Q6XYB7 198 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 DPH6Q7L8W6 267 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 JMYQ8N9B5 988 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 PANK1Q8TE04 598 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 LRRC59Q96AG4 307 aaKnown RBP6.83□□□□□ -1.32
VPS50-214ENST00000477935 IPO9Q96P70 1041 aaKnown RBP6.83□□□□□ -1.32
VPS50-214ENST00000477935 ZFYVE21Q9BQ24 234 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 LNPKQ9C0E8 428 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 PPARGC1AQ9UBK2 798 aaKnown RBP6.83□□□□□ -1.32
VPS50-214ENST00000477935 NCOA3Q9Y6Q9 1424 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 PREX2Q70Z35 1606 aa6.83□□□□□ -1.32
VPS50-214ENST00000477935 PRDM15P57071 1507 aaPredicted RBP6.82□□□□□ -1.32
VPS50-214ENST00000477935 PHLPP1O60346 1717 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 RFXAPO00287 272 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 C6orf222P0C671 652 aaPredicted RBP6.82□□□□□ -1.32
VPS50-214ENST00000477935 ATF2P15336 505 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 GPR85P60893 370 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 KIZQ2M2Z5 673 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 MILR1Q7Z6M3 343 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 FAM129CQ86XR2 697 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 KRTAP1-3Q8IUG1 177 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 IFNL3Q8IZI9 196 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 ZSCAN18Q8TBC5 510 aaPredicted RBP6.82□□□□□ -1.32
VPS50-214ENST00000477935 DHRS4Q9BTZ2 278 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 IRF2BPLQ9H1B7 796 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 EPB41L1Q9H4G0 881 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 TRPC5Q9UL62 973 aaPredicted RBP6.82□□□□□ -1.32
VPS50-214ENST00000477935 PALD1Q9ULE6 856 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 MRPS23Q9Y3D9 190 aaKnown RBP6.82□□□□□ -1.32
VPS50-214ENST00000477935 TRAF6Q9Y4K3 522 aa6.82□□□□□ -1.32
VPS50-214ENST00000477935 ARHGAP23Q9P227 1491 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 DGKIO75912 1065 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 ATF3P18847 181 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 LIMS1P48059 325 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 FZD5Q13467 585 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 CHRNA2Q15822 529 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 ZC3H12BQ5HYM0 836 aaKnown RBP6.81□□□□□ -1.32
VPS50-214ENST00000477935 MAMDC2Q7Z304 686 aaPredicted RBP6.81□□□□□ -1.32
VPS50-214ENST00000477935 AMIGO3Q86WK7 504 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 LILRB2Q8N423 598 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS50-214ENST00000477935 THAP3Q8WTV1 239 aaPredicted RBP6.81□□□□□ -1.32
VPS50-214ENST00000477935 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS50-214ENST00000477935 PTPRN2Q92932 1015 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 KISS1RQ969F8 398 aaPredicted RBP6.81□□□□□ -1.32
VPS50-214ENST00000477935 JAM3Q9BX67 310 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 ZSWIM4Q9H7M6 989 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 FAN1Q9Y2M0 1017 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 SLIT1O75093 1534 aa6.81□□□□□ -1.32
VPS50-214ENST00000477935 GPATCH8Q9UKJ3 1502 aaKnown RBP6.81□□□□□ -1.32
VPS50-214ENST00000477935 ZC3H13Q5T200 1668 aaKnown RBP6.81□□□□□ -1.32
VPS50-214ENST00000477935 HGSO14964 777 aaPredicted RBP6.8□□□□□ -1.32
VPS50-214ENST00000477935 GRK2P25098 689 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 GRK3P35626 688 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 FOXO4P98177 505 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 CCDC144BQ3MJ40 725 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 C2orf27AQ580R0 203 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 EMC4Q5J8M3 183 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 STEAP3Q658P3 488 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 CNKSR3Q6P9H4 555 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 CPA5Q8WXQ8 436 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 DACT3Q96B18 629 aaPredicted RBP6.8□□□□□ -1.32
VPS50-214ENST00000477935 ZNF652Q9Y2D9 606 aa6.8□□□□□ -1.32
VPS50-214ENST00000477935 XIRP1Q702N8 1843 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms