RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RNF208Q9H0X6 261 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 ARPP21Q9UBL0 812 aaPredicted RBP8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 PARP14Q460N5 1801 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 RLFQ13129 1914 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 MYH4Q9Y623 1939 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 RNF113AO15541 343 aaKnown RBP8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 GLRX3O76003 335 aaKnown RBP8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 GJB1P08034 283 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 GNAT2P19087 354 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 MX1P20591 662 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 EPHA1P21709 976 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 MAPK4P31152 587 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 PREPP48147 710 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 GJA8P48165 433 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 ERVK-24P63145 666 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 HDAC1Q13547 482 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 AAMPQ13685 434 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 C12orf60Q5U649 245 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 CEP135Q66GS9 1140 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 CTR9Q6PD62 1173 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 CATSPERGQ6ZRH7 1159 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 BEND4Q6ZU67 534 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 C16orf86Q6ZW13 317 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 CCAR1Q8IX12 1150 aaKnown RBP8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 SOCS4Q8WXH5 440 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 GCC1Q96CN9 775 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 DYNLL2Q96FJ2 89 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 KLHDC7BQ96G42 594 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 CCDC17Q96LX7 622 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 STRBPQ96SI9 672 aaKnown RBP8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 TXNRD2Q9NNW7 524 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 RBPJLQ9UBG7 517 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 RABGAP1Q9Y3P9 1069 aa8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 GREB1LQ9C091 1923 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 COL11A1P12107 1806 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-213ENST00000476903 A0A0G2JMZ2 1700 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 CYP2D7A0A087X1C5 515 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 HMGCRP04035 888 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 BMP3P12645 472 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 AKR1B1P15121 316 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 CAPN2P17655 700 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 CDC25BP30305 580 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 CDK8P49336 464 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 CCNA1P78396 465 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 ICA1Q05084 483 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 COL19A1Q14993 1142 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 MSMPQ1L6U9 139 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 GIMAP6Q6P9H5 292 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 LBX2Q6XYB7 198 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 PI4K2BQ8TCG2 481 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 LPAR1Q92633 364 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 OSBP2Q969R2 916 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 SHISA4Q96DD7 197 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 PAGR1Q9BTK6 254 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 RASSF4Q9H2L5 321 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 RPAP3Q9H6T3 665 aaPredicted RBP8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 SH2D4AQ9H788 454 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 CWC22Q9HCG8 908 aaKnown RBP8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 SH2B1Q9NRF2 756 aaPredicted RBP8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 GJD2Q9UKL4 321 aa8.12□□□□□ -1.11
CCDC88A-213ENST00000476903 ZNFX1Q9P2E3 1918 aaKnown RBP8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 A0A1W2PRG0 241 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 GSG1L2A8MUP6 293 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 WDR64B1ANS9 1081 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 GPAA1O43292 621 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 PEX10O60683 326 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 KIF4AO95239 1232 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 XRCC5P13010 732 aaKnown RBP8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 TDO2P48775 406 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 SBK1Q52WX2 424 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 ANKRD45Q5TZF3 282 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 GPR142Q7Z601 462 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 PLEKHH3Q7Z736 793 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 OTUD7AQ8TE49 926 aaPredicted RBP8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 U2AF1L4Q8WU68 220 aaKnown RBP8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 VTI1AQ96AJ9 217 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 FSD1Q9BTV5 496 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 PPP1R12CQ9BZL4 782 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 TANGO6Q9C0B7 1094 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 KANSL2Q9H9L4 492 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 HOXC10Q9NYD6 342 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 TMX2Q9Y320 296 aa8.11□□□□□ -1.11
CCDC88A-213ENST00000476903 ROBO3Q96MS0 1386 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 ZNF236Q9UL36 1845 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 SALL3Q9BXA9 1300 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 MINDY4BA8MYZ0 360 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 PATL2C9JE40 543 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 SMIM22K7EJ46 135 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 M0R2C6 588 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 CNMDO75829 334 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 SGPL1O95470 568 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 TFRCP02786 760 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 APPP05067 770 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 C8AP07357 584 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 CYP2B6P20813 491 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 RGS2P41220 211 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 HYAL2Q12891 473 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 COG2Q14746 738 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 SIAH1Q8IUQ4 282 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 POU5F2Q8N7G0 328 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms