RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 EMILIN3Q9NT22 766 aa11.86□□□□□ -0.51
VAPB-204ENST00000475243 TPX2Q9ULW0 747 aaKnown RBP11.86□□□□□ -0.51
VAPB-204ENST00000475243 THOC5Q13769 683 aaKnown RBP11.86□□□□□ -0.51
VAPB-204ENST00000475243 ZNF394Q53GI3 561 aa11.86□□□□□ -0.51
VAPB-204ENST00000475243 CUEDC2Q9H467 287 aa11.86□□□□□ -0.51
VAPB-204ENST00000475243 PRKAG2Q9UGJ0 569 aa11.86□□□□□ -0.51
VAPB-204ENST00000475243 ABCC12Q96J65 1359 aa11.86□□□□□ -0.51
VAPB-204ENST00000475243 BBOX1O75936 387 aa11.86□□□□□ -0.51
VAPB-204ENST00000475243 RXRBP28702 533 aa11.86□□□□□ -0.51
VAPB-204ENST00000475243 RPF1Q9H9Y2 349 aaKnown RBP11.86□□□□□ -0.51
VAPB-204ENST00000475243 FAM135BQ49AJ0 1406 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 CDK8P49336 464 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 C10orf76Q5T2E6 689 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 RWDD4Q6NW29 188 aaKnown RBP11.85□□□□□ -0.51
VAPB-204ENST00000475243 RNF139Q8WU17 664 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 MRFAP1L1Q96HT8 127 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 FGD4Q96M96 766 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 MAGEF1Q9HAY2 307 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 MED7O43513 233 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 SUN1O94901 812 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 HEXIM1O94992 359 aaKnown RBP11.85□□□□□ -0.51
VAPB-204ENST00000475243 ARL4AP40617 200 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 GAS2L3Q86XJ1 694 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 K7ERI5 159 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 TTC4O95801 387 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 NFX1Q12986 1120 aaKnown RBP11.85□□□□□ -0.51
VAPB-204ENST00000475243 TMEM206Q9H813 350 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 CDC23Q9UJX2 597 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 MYO1EQ12965 1108 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 CDC37Q16543 378 aaPredicted RBP11.85□□□□□ -0.51
VAPB-204ENST00000475243 TMTC3Q6ZXV5 915 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 EXOC8Q8IYI6 725 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 DEPDC1BQ8WUY9 529 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 NCAPGQ9BPX3 1015 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 SH2B2O14492 632 aaPredicted RBP11.85□□□□□ -0.51
VAPB-204ENST00000475243 POLD4Q9HCU8 107 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 LMCD1Q9NZU5 365 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 PNMA2Q9UL42 364 aa11.85□□□□□ -0.51
VAPB-204ENST00000475243 C21orf2O43822 256 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 PRPSAP2O60256 369 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 EIF4A3P38919 411 aaKnown RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 PCGF5Q86SE9 256 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 GJB4Q9NTQ9 266 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 POLR3EQ9NVU0 708 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 INTUQ9ULD6 942 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 PLEKHA8P1O95397 391 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 TRAPPC10P48553 1259 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 INPP1P49441 399 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 KRT33BQ14525 404 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 SLC17A8Q8NDX2 589 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 SH3RF3Q8TEJ3 882 aaPredicted RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 GANCQ8TET4 914 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 EXT2Q93063 718 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 SLC10A4Q96EP9 437 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 JPH2Q9BR39 696 aaPredicted RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 STAP2Q9UGK3 403 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 USH1CQ9Y6N9 552 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 NCF2P19878 526 aaPredicted RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 EPHB1P54762 984 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 SIX6OS1Q8N1H7 587 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 WDR17Q8IZU2 1322 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 PMLP29590 882 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 FAM133BQ5BKY9 247 aaKnown RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 DSTYKQ6XUX3 929 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 TLK1Q9UKI8 766 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 HABP4Q5JVS0 413 aaKnown RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 PASD1Q8IV76 773 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 SLITRK6Q9H5Y7 841 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 STK17AQ9UEE5 414 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 PCDHA13Q9Y5I0 950 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 PSAPP07602 524 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 MYL3P08590 195 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 KIF23Q02241 960 aaPredicted RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 KRT27Q7Z3Y8 459 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 HAUS8Q9BT25 410 aa11.84□□□□□ -0.51
VAPB-204ENST00000475243 MRPL47Q9HD33 250 aaKnown RBP11.84□□□□□ -0.51
VAPB-204ENST00000475243 SNAP23O00161 211 aa11.83□□□□□ -0.51
VAPB-204ENST00000475243 ECEL1O95672 775 aa11.83□□□□□ -0.51
VAPB-204ENST00000475243 SOX5P35711 763 aa11.83□□□□□ -0.51
VAPB-204ENST00000475243 RUNDC3BQ96NL0 473 aa11.83□□□□□ -0.51
VAPB-204ENST00000475243 PHEXP78562 749 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 CYP27A1Q02318 531 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 TRIM11Q96F44 468 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 Q9H521 79 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 EPS15L1Q9UBC2 864 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 LRRD1A4D1F6 860 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 STK25O00506 426 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 SUSD4Q5VX71 490 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 TCP11Q8WWU5 503 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 MTRQ99707 1265 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 A0A1W2PQ27 194 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 A0A1W2PQ64 194 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 A0A1W2PQD8 194 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 EIF3CLB5ME19 914 aaKnown RBP11.83□□□□□ -0.52
VAPB-204ENST00000475243 GCFC2P16383 781 aaKnown RBP11.83□□□□□ -0.52
VAPB-204ENST00000475243 MXI1P50539 228 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 EIF3CQ99613 913 aaKnown RBP11.83□□□□□ -0.52
VAPB-204ENST00000475243 MSTO1Q9BUK6 570 aa11.83□□□□□ -0.52
VAPB-204ENST00000475243 SPZ1Q9BXG8 430 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms