RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 ERAP1Q9NZ08 941 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 ZMYND8Q9ULU4 1186 aaPredicted RBP16.09■□□□□ 0.17
BRCA1-211ENST00000472490 NOD1Q9Y239 953 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 KIAA1217Q5T5P2 1943 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 K7ELQ4 463 aaPredicted RBP16.08■□□□□ 0.16
BRCA1-211ENST00000472490 HAS3O00219 553 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 TDP2O95551 362 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 CD4P01730 458 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 ATXN8OSP0DMR3 200 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 GNAT1P11488 350 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 RAG1P15918 1043 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 SYN1P17600 705 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 GJB2P29033 226 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 SLC26A2P50443 739 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 ACTR2P61160 394 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 GUCY1B3Q02153 619 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 CUL4AQ13619 759 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 UTP14CQ5TAP6 766 aaKnown RBP16.08■□□□□ 0.16
BRCA1-211ENST00000472490 ZNF746Q6NUN9 644 aaPredicted RBP16.08■□□□□ 0.16
BRCA1-211ENST00000472490 MIS18BP1Q6P0N0 1132 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 TNFRSF25Q93038 417 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 SNX21Q969T3 373 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 LENG9Q96B70 501 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 FAM20AQ96MK3 541 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 MBOAT7Q96N66 472 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 EMSYQ7Z589 1322 aa16.08■□□□□ 0.16
BRCA1-211ENST00000472490 GSTTP1A0A1W2PQM5 241 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 H3BQV1 296 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 DDX39AO00148 427 aaKnown RBP16.07■□□□□ 0.16
BRCA1-211ENST00000472490 KIAA0355O15063 1070 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 TBX3O15119 743 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 MSH4O15457 936 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 MARCH6O60337 910 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 B4GALT4O60513 344 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 GAS7O60861 476 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 BAG4O95429 457 aaKnown RBP16.07■□□□□ 0.16
BRCA1-211ENST00000472490 LRCH2Q5VUJ6 765 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 FAM160B1Q5W0V3 765 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 HSCBQ8IWL3 235 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 INTS4Q96HW7 963 aaKnown RBP16.07■□□□□ 0.16
BRCA1-211ENST00000472490 TEKT3Q9BXF9 490 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 GTF2IRD1Q9UHL9 959 aa16.07■□□□□ 0.16
BRCA1-211ENST00000472490 WDR64B1ANS9 1081 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 DHX15O43143 795 aaKnown RBP16.06■□□□□ 0.16
BRCA1-211ENST00000472490 EDIL3O43854 480 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 ATG7O95352 703 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 PDCP20941 246 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 SFNP31947 248 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 STAT5BP51692 787 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 PTGISQ16647 500 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 PLPPR4Q7Z2D5 763 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 SLFN12Q8IYM2 578 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 CCDC155Q8N6L0 562 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 SLC5A5Q92911 643 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 TRPV6Q9H1D0 765 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 HDAC6Q9UBN7 1215 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 TBX21Q9UL17 535 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 NOL7Q9UMY1 257 aaKnown RBP16.06■□□□□ 0.16
BRCA1-211ENST00000472490 SAMM50Q9Y512 469 aa16.06■□□□□ 0.16
BRCA1-211ENST00000472490 NRCAMQ92823 1304 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 TRIM43BA6NCK2 446 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 BACH1O14867 736 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 LGR5O75473 907 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 TIMP1P01033 207 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 PSAPP07602 524 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 TRAPPC10P48553 1259 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 JAK3P52333 1124 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 EARS2Q5JPH6 523 aaKnown RBP16.05■□□□□ 0.16
BRCA1-211ENST00000472490 LARP1BQ659C4 914 aaKnown RBP16.05■□□□□ 0.16
BRCA1-211ENST00000472490 TRIM50Q86XT4 487 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 NOSTRINQ8IVI9 506 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 RDM1Q8NG50 284 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 TRIM43Q96BQ3 446 aaPredicted RBP16.05■□□□□ 0.16
BRCA1-211ENST00000472490 HIPK3Q9H422 1215 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 TRMT13Q9NUP7 481 aaKnown RBP16.05■□□□□ 0.16
BRCA1-211ENST00000472490 PCDHA10Q9Y5I2 948 aa16.05■□□□□ 0.16
BRCA1-211ENST00000472490 IGKV6D-21A0A0A0MT36 114 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 C17orf102A2RUQ5 167 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 SLC37A4O43826 429 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 PSMD10O75832 226 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 CCNE2O96020 404 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 SMIM10L2AP0DMW4 78 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 SMIM10L2BP0DMW5 78 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 U2AF2P26368 475 aaKnown RBP eCLIP16.04■□□□□ 0.16
BRCA1-211ENST00000472490 ORC2Q13416 577 aaPredicted RBP16.04■□□□□ 0.16
BRCA1-211ENST00000472490 BFSP2Q13515 415 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 GDF6Q6KF10 455 aaPredicted RBP16.04■□□□□ 0.16
BRCA1-211ENST00000472490 ABHD15Q6UXT9 468 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 SH3RF1Q7Z6J0 888 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 TMEM199Q8N511 208 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 ETNPPLQ8TBG4 499 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 AFAP1L1Q8TED9 768 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 KCNMB3Q9NPA1 279 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 ZNF302Q9NR11 478 aa16.04■□□□□ 0.16
BRCA1-211ENST00000472490 NEMFO60524 1076 aa16.03■□□□□ 0.16
BRCA1-211ENST00000472490 HSP90AA1P07900 732 aaKnown RBP16.03■□□□□ 0.16
BRCA1-211ENST00000472490 BMP8BP34820 402 aa16.03■□□□□ 0.16
BRCA1-211ENST00000472490 MAGEA10P43363 369 aaPredicted RBP16.03■□□□□ 0.16
BRCA1-211ENST00000472490 MDM2Q00987 491 aaPredicted RBP16.03■□□□□ 0.16
BRCA1-211ENST00000472490 MCTP1Q6DN14 999 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms